Gene detail information of Glyur000301s00024484.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G43420.1 | 3.00E-68 | RING/U-box superfamily protein |
| NR | XP_003555510.1 | 5.09E-178 | PREDICTED: RING-H2 finger protein ATL16-like [Glycine max] |
| Swissprot | tr|P93823|ATL1_ARATH | 6.00E-103 | RING-H2 finger protein ATL1 |
| trEMBL | tr|K7N4P5|K7N4P5_SOYBN | 2.00E-178 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G34540.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00301 | 57185 | 58924 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000301s00024484.1 | PF13639.1 | zf-RING_2 | 140 | 183 | 8.40E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.636 |
| SRR1783600 | control | 15.445 |
| SRR1783602 | moderate drought stress | 5.780 |
| SRR1811619 | moderate drought stress | 5.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.661 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.575 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.555 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.925 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.799 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.089 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.088 |
| SRR2967015 | Control (Tissue:root) | 12.830 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.398 |
| SRR9715740 | Leave | 0.450 |
| SRR9715741 | Leave | 0.919 |
| SRR9715739 | Root | 4.532 |
| SRR9715742 | Root | 5.555 |
| SRR9715743 | Root | 5.333 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.893 |
| SRR8749028 | MeJA induced 9h | 8.209 |
| SRR8749029 | MeJA induced 9h | 7.807 |
| SRR8749030 | Uninduced | 7.484 |
| SRR8749031 | Uninduced | 2.461 |
| SRR8749032 | Uninduced | 3.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 24.056 |
| SRR8400027 | Control-Root | 20.866 |