Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000301s00024495.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08650.1	1.00E-76	phosphoenolpyruvate carboxylase kinase 1
NR	NP_001237016.1	5.69E-170	phosphoenolpyruvate-carboxylase kinase [Glycine max]
COG	YP_429772.1	2.00E-31	serine/threonine protein kinase [Moorella thermoacetica ATCC 39073]
Swissprot	tr\|Q9SPK4\|PPCK1_ARATH	3.00E-94	Phosphoenolpyruvate carboxylase kinase 1
trEMBL	tr\|Q6ULS3\|Q6ULS3_SOYBN	2.00E-170	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G32990.1}

Sequence

Transcript Sequence

>Glyur000301s00024495.1
AGAAACCGAAAACTCACTGAAACAAACGTCCAGGGCAAGTTTAAAAGCTATAGACAGTATTAGTAATGAGTGAAGACCTCAAGCGNGACTACGTCGTTTTGGCAGAGATCGGCCGGGGAAGATTCGGCACCGTTTACCGGTGCTCCTCCACGGACACCGGCGAGTCCTTCGCCGTGAAGTCGATCGACAAACAGGCGGTAACCGCCAGGGGTGACTCGCTAGACGCCCAATGCCTATTAACGGANCCCAAAATCCTTCAACTTGTCTCCCCTCACCCACACATCGTGAACCTCCACGTCCTCTACGAGGACGACACGTGTCTTCACATGGTCCTCGACCTCTGCTACGAATCGGACCTACACAAACGGGTCATGCCCGAACCCGAAGCGGCTTCCGTCATGTTCCAGCTCATGCAAGCCGTGGCGCACTGCCACCGCACCGGCGTGGCGCACCGGGACATAAAGCCCGACAACATTCTATTCGACGATGAGAATCGGCTCAAGCTCGCCGATCTCGGCTCTGCTGAGGTCTTCAAGGAGGGGGAGATGATGAGTGGGGTGGTGGGGACGCCGCATTACGTGGCGCCGGAGGTTCTCGCCGGTAGGGAATACACCGAGAAGGTCGACGTTTGGAGCGCTGGCGTCGTTTTGTATGAAATGTTGGCGGGGTTTCCGCCGTTTCGGGGCGATTCCCCTGTGGAGATTTTCGATGCTGTGCTTCGGGCCAATTTGAGGTTCCCGAGTCGAGTTTTTTGCTCTGTGTCACCGGCGGTGAAGGATCTGCTCCGTAGAATGCTGTGTAAAGACGTTTCTAGAAGGTTCTCTGCAGAACAAGTTCTGAGGCACCCGTGGTTTAGTGTTGTTGCTGAACAGAACATAGAAACAGAGTGAGTGACTCGACTTGTGAGTTGTGACACGGAGAAGAGATGAATTTAATTACATGCGTGGAGGTGGTGTTTCTGTATATATAAGCGGCACTCTATGCCTTTTAATTTGGGAGCAGAGATTTTTTCTTCTCGGATATGAAGATTGAAGAGAGCACTCTTTTTCCCTTGGCTTGAGGCTTGGGCAGATTACACGGAAGCTGTGTAAAGAAAAGCAGCTGGGGGCTTTTTCCTTCTCTTGAATGTAGCATGGAACGAAACCTTTTTAGATAAGTAGTTTTGTAATGATATGCCATTGAGAGTGTTACTTAAATGAGATGAGAAGGCGTATATATATGNATCTAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00301	158245	159760	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0009966 regulation of signal transduction

molecular_function GO:0004672 protein kinase activity GO:0004674 protein serine/threonine kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000301s00024495.1	PF00069.20	Pkinase	9	263	2.60E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.499
SRR1783600	control	1.555
SRR1783602	moderate drought stress	0.711
SRR1811619	moderate drought stress	0.711

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.355
DRR006520	Root Summer glycyrrhizin high producing strain	3.324
DRR006521	Root Winter glycyrrhizin high producing strain	0.090
DRR006522	Root Winter glycyrrhizin high producing strain	0.089
DRR006523	Root Summer glycyrrhizin low producing strain	1.154
DRR006524	Root Summer glycyrrhizin low producing strain	1.260
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.889
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.877

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	3.275
SRR2868004	Drought Stress(Tissue:root)	2.009
SRR2967015	Control (Tissue:root)	1.997

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.033
SRR9715740	Leave	1.063
SRR9715741	Leave	1.757
SRR9715739	Root	1.623
SRR9715742	Root	1.675
SRR9715743	Root	1.347

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.193
SRR8749028	MeJA induced 9h	4.866
SRR8749029	MeJA induced 9h	12.245
SRR8749030	Uninduced	0.655
SRR8749031	Uninduced	1.149
SRR8749032	Uninduced	11.495

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	6.555
SRR8400027	Control-Root	8.951