Gene detail information of Glyur000304s00027650.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G39990.17.00E-113eukaryotic translation initiation factor 2
NRXP_004503233.10PREDICTED: eukaryotic translation initiation factor 3 subunit F-like isoform X1 [Cicer arietinum]
Swissprottr|O04202|EIF3F_ARATH3.00E-147Eukaryotic translation initiation factor 3 subunit F {ECO:0000255|HAMAP-Rule:MF_03005}
trEMBLtr|B7FK44|B7FK44_MEDTR1.00E-179Eukaryotic translation initiation factor 3 subunit F {ECO:0000256|HAMAP-Rule:MF_03005}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00304154810161190-


Gene family

Gene familysubfamily
Ubiquitin FamilyJAMM


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0005737  cytoplasm

GO:0005852  eukaryotic translation initiation factor 3 complex


molecular_function

GO:0003743  translation initiation factor activity

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000304s00027650.2PF01398.16JAB211241.10E-18
Glyur000304s00027650.2PF13012.1MitMem_reg1762832.00E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control79.932
SRR1783600control80.632
SRR1783602moderate drought stress101.188
SRR1811619moderate drought stress101.112

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain94.156
DRR006520Root Summer glycyrrhizin high producing strain92.953
DRR006521Root Winter glycyrrhizin high producing strain77.433
DRR006522Root Winter glycyrrhizin high producing strain74.773
DRR006523Root Summer glycyrrhizin low producing strain104.977
DRR006524Root Summer glycyrrhizin low producing strain105.116
DRR006525Leaf Summer glycyrrhizin high producing strain33.853
DRR006526Leaf Summer glycyrrhizin high producing strain33.629

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)55.819
SRR2868004Drought Stress(Tissue:root)40.281
SRR2967015Control (Tissue:root)39.409

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave30.714
SRR9715740Leave38.527
SRR9715741Leave31.499
SRR9715739Root35.143
SRR9715742Root48.790
SRR9715743Root45.609

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h104.080
SRR8749028MeJA induced 9h71.805
SRR8749029MeJA induced 9h72.168
SRR8749030Uninduced21.899
SRR8749031Uninduced13.994
SRR8749032Uninduced19.764

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root55.106
SRR8400027Control-Root52.106

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved