Gene detail information of Glyur000305s00025122.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G33150.11.00E-113peroxisomal 3-ketoacyl-CoA thiolase 3
NRXP_003604976.103-ketoacyl-CoA thiolase 2, peroxisomal [Medicago truncatula]
COGYP_002316823.12.00E-73acetyl-CoA acetyltransferase [Anoxybacillus flavithermus WK1]
Swissprottr|Q56WD9|THIK2_ARATH2.00E-1503-ketoacyl-CoA thiolase 2, peroxisomal (Precursor)
trEMBLtr|G7JUJ9|G7JUJ9_MEDTR03-ketoacyl-CoA thiolase 2, peroxisomal-like protein {ECO:0000313|EMBL:AES87173.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00305167082173310+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K07513ACAA1 EC:2.3.1.16 Fatty acid metabolism map01212
Fatty acid degradationmap00071
alpha-Linolenic acid metabolismmap00592
Biosynthesis of unsaturated fatty acidsmap01040
Valine, leucine and isoleucine degradationmap00280
Peroxisomemap04146
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000305s00025122.1PF00108.18Thiolase_N921401.30E-10
Glyur000305s00025122.1PF00108.18Thiolase_N1481895.40E-12
Glyur000305s00025122.1PF02803.13Thiolase_C2153323.90E-44


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.118
SRR1783600control18.022
SRR1783602moderate drought stress13.403
SRR1811619moderate drought stress13.774

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.129
DRR006520Root Summer glycyrrhizin high producing strain29.083
DRR006521Root Winter glycyrrhizin high producing strain3.299
DRR006522Root Winter glycyrrhizin high producing strain3.292
DRR006523Root Summer glycyrrhizin low producing strain7.078
DRR006524Root Summer glycyrrhizin low producing strain6.525
DRR006525Leaf Summer glycyrrhizin high producing strain14.692
DRR006526Leaf Summer glycyrrhizin high producing strain14.568

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)56.703
SRR2868004Drought Stress(Tissue:root)59.708
SRR2967015Control (Tissue:root)52.721

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave39.075
SRR9715740Leave14.261
SRR9715741Leave35.798
SRR9715739Root9.402
SRR9715742Root26.397
SRR9715743Root24.505

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.302
SRR8749028MeJA induced 9h2.413
SRR8749029MeJA induced 9h8.973
SRR8749030Uninduced12.529
SRR8749031Uninduced8.534
SRR8749032Uninduced20.897

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root62.036
SRR8400027Control-Root42.038

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved