Gene detail information of Glyur000305s00025125.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G37590.1 | 2.00E-32 | DNA binding with one finger 2.4 |
| NR | XP_007134031.1 | 6.61E-102 | hypothetical protein PHAVU_010G013500g [Phaseolus vulgaris] |
| Swissprot | tr|O80928|DOF24_ARATH | 2.00E-52 | Dof zinc finger protein DOF2.4 |
| trEMBL | tr|V7AL92|V7AL92_PHAVU | 2.00E-102 | Uncharacterized protein {ECO:0000313|EMBL:ESW06025.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00305 | 200330 | 201786 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000305s00025125.1 | PF02701.10 | zf-Dof | 78 | 137 | 5.50E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.490 |
| SRR1783600 | control | 0.470 |
| SRR1783602 | moderate drought stress | 0.574 |
| SRR1811619 | moderate drought stress | 0.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.175 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.343 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.271 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.131 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.873 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.887 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.005 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.952 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.397 |
| SRR2967015 | Control (Tissue:root) | 3.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.690 |
| SRR9715740 | Leave | 0.881 |
| SRR9715741 | Leave | 2.472 |
| SRR9715739 | Root | 1.141 |
| SRR9715742 | Root | 1.693 |
| SRR9715743 | Root | 1.621 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.396 |
| SRR8400027 | Control-Root | 1.708 |