Gene detail information of Glyur000306s00014026.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G43990.2 | 1.00E-133 | SET-domain containing protein lysine methyltransferase family protein |
| NR | XP_004495064.1 | 0 | PREDICTED: histone-lysine N-methyltransferase SUVR2-like isoform X1 [Cicer arietinum] |
| COG | YP_001914923.1 | 1.00E-09 | nuclear protein SET [Xanthomonas oryzae pv. oryzae PXO99A] |
| Swissprot | tr|Q9FNC7|SUVR2_ARATH | 2.00E-170 | Histone-lysine N-methyltransferase SUVR2 |
| trEMBL | tr|K7LHC7|K7LHC7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G04580.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00306 | 154302 | 160838 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000306s00014026.1 | PF10440.4 | WIYLD | 1 | 60 | 1.90E-18 |
| Glyur000306s00014026.1 | PF05033.11 | Pre-SET | 472 | 618 | 3.40E-16 |
| Glyur000306s00014026.1 | PF00856.23 | SET | 638 | 759 | 7.10E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.256 |
| SRR1783600 | control | 19.312 |
| SRR1783602 | moderate drought stress | 18.722 |
| SRR1811619 | moderate drought stress | 18.620 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.700 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.171 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.166 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.923 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.704 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.251 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.514 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.141 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.246 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.086 |
| SRR2967015 | Control (Tissue:root) | 19.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.240 |
| SRR9715740 | Leave | 5.781 |
| SRR9715741 | Leave | 6.399 |
| SRR9715739 | Root | 3.485 |
| SRR9715742 | Root | 15.889 |
| SRR9715743 | Root | 14.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 100.487 |
| SRR8749028 | MeJA induced 9h | 24.901 |
| SRR8749029 | MeJA induced 9h | 47.902 |
| SRR8749030 | Uninduced | 7.649 |
| SRR8749031 | Uninduced | 15.971 |
| SRR8749032 | Uninduced | 15.670 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 27.519 |
| SRR8400027 | Control-Root | 27.383 |