Gene detail information of Glyur000306s00014034.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G44030.1 | 0 | cellulose synthase A4 |
| NR | KEH42480.1 | 0 | cellulose synthase-like protein [Medicago truncatula] |
| COG | YP_002489496.1 | 3.00E-14 | cellulose synthase [Arthrobacter chlorophenolicus A6] |
| Swissprot | tr|Q84JA6|CESA4_ARATH | 0 | Cellulose synthase A catalytic subunit 4 [UDP-forming] |
| trEMBL | tr|A0A072VWL8|A0A072VWL8_MEDTR | 0 | Cellulose synthase-like protein {ECO:0000313|EMBL:KEH42480.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00306 | 181501 | 186278 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000306s00014034.1 | PF03552.9 | Cellulose_synt | 115 | 798 | 0 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.016 |
| SRR1783600 | control | 2.050 |
| SRR1783602 | moderate drought stress | 4.706 |
| SRR1811619 | moderate drought stress | 4.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.224 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.222 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.137 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.137 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 22.474 |
| SRR2868004 | Drought Stress(Tissue:root) | 36.945 |
| SRR2967015 | Control (Tissue:root) | 26.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.050 |
| SRR9715740 | Leave | 0.072 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 1.673 |
| SRR9715742 | Root | 1.854 |
| SRR9715743 | Root | 2.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.088 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.032 |
| SRR8749032 | Uninduced | 0.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 66.026 |
| SRR8400027 | Control-Root | 120.818 |