Gene detail information of Glyur000307s00023022.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G73370.10sucrose synthase 6
NRXP_003600643.10Sucrose synthase [Medicago truncatula]
COGYP_003529337.10sucrose synthase [Nitrosococcus halophilus Nc 4]
Swissprottr|Q9FX32|SUS6_ARATH0Sucrose synthase 6
trEMBLtr|G7J800|G7J800_MEDTR0Sucrose synthase {ECO:0000256|RuleBase:RU280817}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00307128016134670-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT4


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00695E2.4.1.13 EC:2.4.1.13 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0005985  sucrose metabolic process

GO:0009058  biosynthetic process


molecular_function

GO:0016157  sucrose synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000307s00023022.1PF00862.14Sucrose_synth191289.90E-23
Glyur000307s00023022.1PF00862.14Sucrose_synth1323841.50E-129
Glyur000307s00023022.1PF00534.15Glycos_transf_13905582.10E-29


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.758
SRR1783600control0.909
SRR1783602moderate drought stress0.463
SRR1811619moderate drought stress0.466

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.150
DRR006520Root Summer glycyrrhizin high producing strain3.059
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.046
DRR006523Root Summer glycyrrhizin low producing strain6.311
DRR006524Root Summer glycyrrhizin low producing strain6.281
DRR006525Leaf Summer glycyrrhizin high producing strain1.762
DRR006526Leaf Summer glycyrrhizin high producing strain1.713

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.635
SRR2868004Drought Stress(Tissue:root)7.219
SRR2967015Control (Tissue:root)5.921

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.451
SRR9715740Leave0.055
SRR9715741Leave0.260
SRR9715739Root0.048
SRR9715742Root0.541
SRR9715743Root0.610

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.007
SRR8749028MeJA induced 9h0.015
SRR8749029MeJA induced 9h0.052
SRR8749030Uninduced0.006
SRR8749031Uninduced0.224
SRR8749032Uninduced0.049

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.586
SRR8400027Control-Root1.798

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved