Gene detail information of Glyur000308s00025260.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79380.1 | 1.00E-120 | Ca(2)-dependent phospholipid-binding protein (Copine) family |
| NR | XP_003532904.1 | 0 | PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Glycine max] |
| Swissprot | tr|Q9LY87|RGLG2_ARATH | 8.00E-132 | E3 ubiquitin-protein ligase RGLG2 |
| trEMBL | tr|I1KTV7|I1KTV7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G17330.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00308 | 89361 | 96375 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000308s00025260.1 | PF07002.11 | Copine | 146 | 290 | 1.80E-47 |
| Glyur000308s00025260.1 | PF13920.1 | zf-C3HC4_3 | 366 | 406 | 2.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.564 |
| SRR1783600 | control | 1.484 |
| SRR1783602 | moderate drought stress | 2.302 |
| SRR1811619 | moderate drought stress | 2.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.920 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.616 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.584 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.459 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.768 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.094 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.421 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.156 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.112 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.510 |
| SRR2967015 | Control (Tissue:root) | 15.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.924 |
| SRR9715740 | Leave | 2.908 |
| SRR9715741 | Leave | 5.786 |
| SRR9715739 | Root | 0.270 |
| SRR9715742 | Root | 5.025 |
| SRR9715743 | Root | 3.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.014 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.022 |
| SRR8749031 | Uninduced | 0.026 |
| SRR8749032 | Uninduced | 0.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.811 |
| SRR8400027 | Control-Root | 3.879 |