Gene detail information of Glyur000308s00025268.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79430.2 | 6.00E-96 | Homeodomain-like superfamily protein |
| NR | XP_006598222.1 | 0 | PREDICTED: myb family transcription factor APL-like isoform X2 [Glycine max] |
| Swissprot | tr|Q9SAK5|APL_ARATH | 1.00E-123 | Myb family transcription factor APL |
| trEMBL | tr|I1MJE3|I1MJE3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G41740.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00308 | 165289 | 167867 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | G2-like |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000308s00025268.1 | PF00249.26 | Myb_DNA-binding | 37 | 88 | 2.20E-20 |
| Glyur000308s00025268.1 | PF14379.1 | Myb_CC_LHEQLE | 132 | 180 | 2.80E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.326 |
| SRR1783600 | control | 8.489 |
| SRR1783602 | moderate drought stress | 13.327 |
| SRR1811619 | moderate drought stress | 13.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.286 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.220 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.110 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.821 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 44.025 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 44.297 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 39.548 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 39.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.003 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.822 |
| SRR2967015 | Control (Tissue:root) | 26.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 44.756 |
| SRR9715740 | Leave | 46.958 |
| SRR9715741 | Leave | 48.425 |
| SRR9715739 | Root | 13.437 |
| SRR9715742 | Root | 25.653 |
| SRR9715743 | Root | 21.158 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.218 |
| SRR8400027 | Control-Root | 21.809 |