Gene detail

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Gene detail information of Glyur000309s00018407.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G55830.1	4.00E-156	Concanavalin A-like lectin protein kinase family protein
NR	KEH34092.1	0	lectin receptor kinase [Medicago truncatula]
COG	YP_003270695.1	2.00E-25	serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9FHG4\|LRKS7_ARATH	0	Probable L-type lectin-domain containing receptor kinase S.7 (Precursor)
trEMBL	tr\|A0A072UWU3\|A0A072UWU3_MEDTR	0	Lectin receptor kinase {ECO:0000313\|EMBL:KEH34092.1}

Sequence

Transcript Sequence

>Glyur000309s00018407.1
ATGTCTCCGACAACCACCACAGTGTTGTTCCTGTTTCTGTTCTTGCCTCTAACCACACTCTCACAGAACACAAGCTTCAACTTCCCCTCATTCACCCTCCGCAACATCACCCTCCTCGGCGATTCCTTCCTCCGCGATGGCGTGGTGGGCCTCACCCGCTCCACCACCGTCCCCGCCTCCAGCTTCGGCACCCTCCTCTACAACAACCCAATCACCCTCTCCCACCCAAACAACTCAACCCCTTCCTTTTCAACCACCTTCTCCTTCTCCATCACCAACACCACCAACCCTCCCTCTTCCCCACTCAACCGCTTCTCCTTCTTCCTCAACTCCTCCTCACCCATCACCCTCTCCTTCTACACCAACGACAACCACATTGCTTTCGACTTAAACCCCTTCAATTCCACCACCCAAACAACCACTTCGCTGCCCATTAACCTCCGAAGTGGAAACTTAATCACCTCTTGGATTGACTACAACGGTTTTAAGAAAAAGTTTAGTGTTTTCTTAACGAATTCGAGTTCTAGTTCTTCTTCCAAGCCTGAAAAANCGGTCTTGAGCGTTGAGGTTGACCTCTCTGAGTACTTGAAGGAGATTCTCTATGTGGGGTTTTCGGGTAACACTGAAGGAAGCACCGAGCTTCAACAAATCGTGAGTTGGAGCTTCGAGTGGCATCAGTTTCTTCTTCCCCAAAATCAAAATCAAAGCTTGGTGGAGGATATTCCTTCTTCTGCTTCTTCAAGCTCCACCACCCACAACAACCGTCATGGCAAGAGGTTTGTGATTGGTTTTTGTGTTGCAGTTGTCGGTCCAGCTTTTTTCTGTGTGGTGCTTTTGGTTTTCGGGTACGTTTCTTTTCGGAAATGGAGTGGTGTGAGGAATCAGAAGAAGAAGAATAAGAATAATAGCTCTGTGGGGTGTCCTAAGGAGTTTGGTTACAAGGAATTGAAATCAGCCACTAAAGGGTTTCATGTTTCGAGGATCATCGGGAATGGATCGTTTGGGACTGTGTACAAGGCCTTGTTTGTGTCTTNAGGAACCGTTGCTGCAGTGAAAAGGTCAAGGTCAACACATTCCCATGAAGGGAAAACAGAATTCCTTGCTGAGTTATCTATTATAGCTGGTTTGAGGCACAAGAACTTGGTTCAGCTTCTGGGTTGGTGTGTTGAGAAGGGTGAGTTGTTGCTTGTGTATGAGTTCATGCCCAATGGAAGCTTGGACAAGATGCTCCATCACAATGAGTGTGGCAATGGCAATTTGTTGTTGTTGAGTTGGGTTCAAAGGCTTAACATTGTGGTTGGTTTGGCTTCTGTTCTGGCTTATTTGCATCAAGAGTGTGAGCAAAGGGTAGTCCACAGAGACATCAAGAGTGGGAACATATTGCTGGACGGGAACTTCAACCCAAGGTTGGGTGATTTTGGGTTGGCAAAGCTTATGGATCATGATAAGAGTCCAGTTTCAACATTAACTGCTGGCACAATGGGGTACTTAGCCCCTGAGTATCTTCAATATGGGAAGGCTACTGATAAAACTGATGTTTTCAGCTATGGTGTGGTTGTGCTTGAGGTTGCTTGTGGGAGGAGGCCAATTGAGAAAGAGGGTCAAGAGATGGTGAACTTGGTTGATTATGTTTGGGGGCTTCACTCACAAGGGAAGATAATTGAGGCCGCTGATACAAGGTTGAAAAAAAATGGGGGGTTTCAGGAGGAGGAAATGAAGAAGCTTTTGCTATTGGGGTTGAGCTGTGCAAACCCGGATAGTGAACAAAGGCCTTCCATGAGAAGAGTCCTTCAGATTCTCAACAATGAAGCTGTGCCTCTTGTTGTGCCTAAAGTGAAACCATGCCTTACTTTCTCATCTGGATTGCCATTGACTCTTGATGAGATTGTTTTTGATACTGAGGAAAGGTTTAATTCCAACAACAACCAGTATACTTGCCAGATCAAAGTTGAATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00309	4626	6581	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.11.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000309s00018407.1	PF00139.14	Lectin_legB	23	113	6.40E-14
Glyur000309s00018407.1	PF00139.14	Lectin_legB	121	223	4.40E-22
Glyur000309s00018407.1	PF00069.20	Pkinase	323	598	4.40E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.780
SRR1783600	control	1.785
SRR1783602	moderate drought stress	0.823
SRR1811619	moderate drought stress	0.684

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.840
DRR006520	Root Summer glycyrrhizin high producing strain	1.620
DRR006521	Root Winter glycyrrhizin high producing strain	0.057
DRR006522	Root Winter glycyrrhizin high producing strain	0.111
DRR006523	Root Summer glycyrrhizin low producing strain	0.564
DRR006524	Root Summer glycyrrhizin low producing strain	0.576
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.482
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.537

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	7.418
SRR2868004	Drought Stress(Tissue:root)	2.664
SRR2967015	Control (Tissue:root)	4.520

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.409
SRR9715740	Leave	0.186
SRR9715741	Leave	0.158
SRR9715739	Root	2.881
SRR9715742	Root	1.032
SRR9715743	Root	1.049

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.309
SRR8749028	MeJA induced 9h	1.742
SRR8749029	MeJA induced 9h	0.830
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	6.613
SRR8400027	Control-Root	6.754