Gene detail information of Glyur000309s00018408.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G55760.1 | 0 | sirtuin 1 |
| NR | XP_004516096.1 | 0 | PREDICTED: NAD-dependent protein deacetylase SRT1-like [Cicer arietinum] |
| COG | YP_462245.1 | 2.00E-38 | sir2 family protein [Syntrophus aciditrophicus SB] |
| Swissprot | tr|Q9FE17|SIR1_ARATH | 0 | NAD-dependent protein deacetylase SRT1 |
| trEMBL | tr|V7BPZ4|V7BPZ4_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW18641.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00309 | 20005 | 28272 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K11416 | SIRT6, SIR2L6 | EC:2.4.2.31 | Central carbon metabolism in cancer | map05230 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000309s00018408.2 | PF02146.12 | SIR2 | 52 | 75 | 2.70E-05 |
| Glyur000309s00018408.2 | PF02146.12 | SIR2 | 87 | 233 | 1.40E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.498 |
| SRR1783600 | control | 4.692 |
| SRR1783602 | moderate drought stress | 6.048 |
| SRR1811619 | moderate drought stress | 5.908 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.542 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.328 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.424 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.325 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.658 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.529 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.442 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.587 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.377 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.290 |
| SRR2967015 | Control (Tissue:root) | 8.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.007 |
| SRR9715740 | Leave | 5.799 |
| SRR9715741 | Leave | 6.687 |
| SRR9715739 | Root | 1.901 |
| SRR9715742 | Root | 4.709 |
| SRR9715743 | Root | 4.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.255 |
| SRR8749028 | MeJA induced 9h | 20.980 |
| SRR8749029 | MeJA induced 9h | 13.956 |
| SRR8749030 | Uninduced | 14.694 |
| SRR8749031 | Uninduced | 4.836 |
| SRR8749032 | Uninduced | 8.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.132 |
| SRR8400027 | Control-Root | 11.103 |