Gene detail information of Glyur000309s00018413.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G62940.10acyl-CoA synthetase 5
NRXP_004516098.10PREDICTED: 4-coumarate--CoA ligase-like 1-like [Cicer arietinum]
COGYP_003407466.17.00E-115AMP-dependent synthetase and ligase [Geodermatophilus obscurus DSM 43160]
Swissprottr|Q9LQ12|4CLL1_ARATH04-coumarate--CoA ligase-like 1
trEMBLtr|A0A072UWU0|A0A072UWU0_MEDTR04-coumarate:CoA ligase-like protein {ECO:0000313|EMBL:KEH34087.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003095305856229-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K019044CL EC:6.2.1.12 Phenylalanine metabolism map00360
Ubiquinone and other terpenoid-quinone biosynthesismap00130
Phenylpropanoid biosynthesismap00940


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000309s00018413.1PF00501.23AMP-binding411085.10E-11
Glyur000309s00018413.1PF00501.23AMP-binding1414103.90E-66
Glyur000309s00018413.1PF13193.1AMP-binding_C4194944.10E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.351
SRR1783600control0.342
SRR1783602moderate drought stress0.024
SRR1811619moderate drought stress0.024

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.199
DRR006520Root Summer glycyrrhizin high producing strain0.249
DRR006521Root Winter glycyrrhizin high producing strain0.142
DRR006522Root Winter glycyrrhizin high producing strain0.070
DRR006523Root Summer glycyrrhizin low producing strain0.026
DRR006524Root Summer glycyrrhizin low producing strain0.070
DRR006525Leaf Summer glycyrrhizin high producing strain0.278
DRR006526Leaf Summer glycyrrhizin high producing strain0.291

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.404
SRR2868004Drought Stress(Tissue:root)1.414
SRR2967015Control (Tissue:root)0.529

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.151
SRR9715740Leave0.000
SRR9715741Leave0.060
SRR9715739Root0.145
SRR9715742Root0.033
SRR9715743Root0.000

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.315
SRR8749028MeJA induced 9h0.281
SRR8749029MeJA induced 9h0.903
SRR8749030Uninduced0.270
SRR8749031Uninduced0.107
SRR8749032Uninduced0.033

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.012
SRR8400027Control-Root0.570