Gene detail information of Glyur000309s00018413.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT1G62940.1 | 0 | acyl-CoA synthetase 5 |
NR | XP_004516098.1 | 0 | PREDICTED: 4-coumarate--CoA ligase-like 1-like [Cicer arietinum] |
COG | YP_003407466.1 | 7.00E-115 | AMP-dependent synthetase and ligase [Geodermatophilus obscurus DSM 43160] |
Swissprot | tr|Q9LQ12|4CLL1_ARATH | 0 | 4-coumarate--CoA ligase-like 1 |
trEMBL | tr|A0A072UWU0|A0A072UWU0_MEDTR | 0 | 4-coumarate:CoA ligase-like protein {ECO:0000313|EMBL:KEH34087.1} |
Sequence
Transcript Sequence |
---|
Protein Sequence |
---|
Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00309 | 53058 | 56229 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K01904 | 4CL | EC:6.2.1.12 | Phenylalanine metabolism | map00360 |
Ubiquinone and other terpenoid-quinone biosynthesis | map00130 | |||
Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000309s00018413.1 | PF00501.23 | AMP-binding | 41 | 108 | 5.10E-11 |
Glyur000309s00018413.1 | PF00501.23 | AMP-binding | 141 | 410 | 3.90E-66 |
Glyur000309s00018413.1 | PF13193.1 | AMP-binding_C | 419 | 494 | 4.10E-14 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 0.351 |
SRR1783600 | control | 0.342 |
SRR1783602 | moderate drought stress | 0.024 |
SRR1811619 | moderate drought stress | 0.024 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 0.199 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 0.249 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 0.142 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 0.070 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 0.026 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 0.070 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.278 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.291 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 2.404 |
SRR2868004 | Drought Stress(Tissue:root) | 1.414 |
SRR2967015 | Control (Tissue:root) | 0.529 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 1.151 |
SRR9715740 | Leave | 0.000 |
SRR9715741 | Leave | 0.060 |
SRR9715739 | Root | 0.145 |
SRR9715742 | Root | 0.033 |
SRR9715743 | Root | 0.000 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 0.315 |
SRR8749028 | MeJA induced 9h | 0.281 |
SRR8749029 | MeJA induced 9h | 0.903 |
SRR8749030 | Uninduced | 0.270 |
SRR8749031 | Uninduced | 0.107 |
SRR8749032 | Uninduced | 0.033 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 1.012 |
SRR8400027 | Control-Root | 0.570 |