Gene detail information of Glyur000309s00018419.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G14540.15.00E-54nuclear factor Y, subunit B3
NRXP_006602134.12.68E-107PREDICTED: nuclear transcription factor Y subunit B-2 [Glycine max]
Swissprottr|O23310|NFYB3_ARATH2.00E-71Nuclear transcription factor Y subunit B-3
trEMBLtr|I1KYJ4|I1KYJ4_SOYBN1.00E-101Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G44140.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003097496476047-


Gene family

Gene familysubfamily
Transcription Factors FamilyNF-YB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005622  intracellular

GO:0005634  nucleus


molecular_function

GO:0043565  sequence-specific DNA binding

GO:0046982  protein heterodimerization activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000309s00018419.1PF00808.18CBFD_NFYB_HMF32966.00E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.759
SRR1783600control19.451
SRR1783602moderate drought stress21.727
SRR1811619moderate drought stress21.217

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.651
DRR006520Root Summer glycyrrhizin high producing strain22.706
DRR006521Root Winter glycyrrhizin high producing strain6.635
DRR006522Root Winter glycyrrhizin high producing strain5.844
DRR006523Root Summer glycyrrhizin low producing strain19.480
DRR006524Root Summer glycyrrhizin low producing strain19.105
DRR006525Leaf Summer glycyrrhizin high producing strain31.670
DRR006526Leaf Summer glycyrrhizin high producing strain32.074

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.472
SRR2868004Drought Stress(Tissue:root)23.953
SRR2967015Control (Tissue:root)28.684

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave44.583
SRR9715740Leave41.696
SRR9715741Leave39.981
SRR9715739Root50.342
SRR9715742Root29.050
SRR9715743Root29.832

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.075
SRR8749028MeJA induced 9h29.812
SRR8749029MeJA induced 9h20.233
SRR8749030Uninduced39.159
SRR8749031Uninduced24.906
SRR8749032Uninduced43.468

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.279
SRR8400027Control-Root21.776

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved