Gene detail information of Glyur000310s00013609.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G43000.1 | 2.00E-36 | NAC domain containing protein 42 |
| NR | XP_007149303.1 | 4.81E-73 | hypothetical protein PHAVU_005G059000g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SK55|NAC42_ARATH | 3.00E-45 | Transcription factor JUNGBRUNNEN 1 |
| trEMBL | tr|V7BTH2|V7BTH2_PHAVU | 2.00E-73 | Uncharacterized protein {ECO:0000313|EMBL:ESW21297.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00310 | 63930 | 65761 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NAC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000310s00013609.1 | PF02365.10 | NAM | 23 | 67 | 5.50E-15 |
| Glyur000310s00013609.1 | PF02365.10 | NAM | 69 | 95 | 1.40E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.244 |
| SRR1783600 | control | 0.122 |
| SRR1783602 | moderate drought stress | 0.149 |
| SRR1811619 | moderate drought stress | 0.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.579 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.163 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.148 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.144 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.125 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.266 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.259 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.326 |
| SRR2868004 | Drought Stress(Tissue:root) | 37.180 |
| SRR2967015 | Control (Tissue:root) | 16.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.806 |
| SRR9715740 | Leave | 0.789 |
| SRR9715741 | Leave | 3.806 |
| SRR9715739 | Root | 0.123 |
| SRR9715742 | Root | 0.574 |
| SRR9715743 | Root | 0.420 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.007 |
| SRR8749028 | MeJA induced 9h | 0.111 |
| SRR8749029 | MeJA induced 9h | 0.060 |
| SRR8749030 | Uninduced | 1.576 |
| SRR8749031 | Uninduced | 0.646 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.218 |
| SRR8400027 | Control-Root | 5.001 |