Gene detail information of Glyur000310s00013611.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31320.1 | 1.00E-47 | LOB domain-containing protein 4 |
| NR | XP_003531496.1 | 1.49E-85 | PREDICTED: LOB domain-containing protein 4-like [Glycine max] |
| Swissprot | tr|Q9SHE9|LBD4_ARATH | 3.00E-68 | LOB domain-containing protein 4 |
| trEMBL | tr|I1KU11|I1KU11_SOYBN | 6.00E-86 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G17990.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00310 | 70999 | 75576 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000310s00013611.1 | PF03195.9 | DUF260 | 15 | 114 | 1.10E-42 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.116 |
| SRR1783600 | control | 1.103 |
| SRR1783602 | moderate drought stress | 3.133 |
| SRR1811619 | moderate drought stress | 2.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.513 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.198 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.193 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.198 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 43.499 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 43.972 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.717 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.265 |
| SRR2967015 | Control (Tissue:root) | 5.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.567 |
| SRR9715742 | Root | 1.103 |
| SRR9715743 | Root | 1.482 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.532 |
| SRR8400027 | Control-Root | 29.387 |