Gene detail information of Glyur000311s00024710.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17750.1 | 8.00E-25 | heat shock factor 1 |
| NR | AGJ83756.1 | 2.12E-58 | heat stress transcription factor A-4a-like protein [Caragana korshinskii] |
| Swissprot | tr|Q6F388|HFA2E_ORYSJ | 9.00E-35 | Heat stress transcription factor A-2e |
| trEMBL | tr|R9R6C4|R9R6C4_9FABA | 8.00E-59 | Heat stress transcription factor A-4a-like protein {ECO:0000313|EMBL:AGJ83756.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00311 | 22362 | 23123 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000311s00024710.1 | PF00447.12 | HSF_DNA-bind | 16 | 123 | 2.80E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.080 |
| SRR1783600 | control | 0.101 |
| SRR1783602 | moderate drought stress | 0.100 |
| SRR1811619 | moderate drought stress | 0.138 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.253 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.160 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.247 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.205 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.384 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.575 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.069 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.071 |
| SRR9715741 | Leave | 0.356 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.199 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.172 |
| SRR8749029 | MeJA induced 9h | 0.045 |
| SRR8749030 | Uninduced | 0.071 |
| SRR8749031 | Uninduced | 0.083 |
| SRR8749032 | Uninduced | 0.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.025 |
| SRR8400027 | Control-Root | 0.048 |