Gene detail information of Glyur000311s00024716.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT3G47000.1 | 8.00E-34 | Glycosyl hydrolase family protein |
NR | XP_007146739.1 | 1.33E-45 | hypothetical protein PHAVU_006G065600g [Phaseolus vulgaris] |
COG | YP_005529263.1 | 2.00E-19 | beta-glucosidase [Amycolatopsis mediterranei S699] |
trEMBL | tr|V7BNX5|V7BNX5_PHAVU | 5.00E-46 | Uncharacterized protein {ECO:0000313|EMBL:ESW18733.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00311 | 78393 | 82958 | - |
Gene family
Gene family | subfamily |
---|---|
Carbohydrate-Active enzymes Family | GH3 |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K05349 | bglX | EC:3.2.1.21 | Starch and sucrose metabolism | map00500 |
Cyanoamino acid metabolism | map00460 | |||
Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000311s00024716.1 | PF00933.16 | Glyco_hydro_3 | 66 | 123 | 3.30E-08 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 5.513 |
SRR1783600 | control | 5.553 |
SRR1783602 | moderate drought stress | 2.817 |
SRR1811619 | moderate drought stress | 2.827 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 7.774 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 7.465 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 15.589 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 14.990 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 8.163 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 7.962 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.519 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.558 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 5.392 |
SRR2868004 | Drought Stress(Tissue:root) | 5.441 |
SRR2967015 | Control (Tissue:root) | 5.814 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 0.793 |
SRR9715740 | Leave | 1.261 |
SRR9715741 | Leave | 1.075 |
SRR9715739 | Root | 0.178 |
SRR9715742 | Root | 1.081 |
SRR9715743 | Root | 0.502 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 8.244 |
SRR8749028 | MeJA induced 9h | 10.188 |
SRR8749029 | MeJA induced 9h | 4.764 |
SRR8749030 | Uninduced | 4.527 |
SRR8749031 | Uninduced | 3.980 |
SRR8749032 | Uninduced | 2.506 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 7.424 |
SRR8400027 | Control-Root | 6.013 |