Gene detail information of Glyur000312s00021997.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G47500.1 | 1.00E-56 | cycling DOF factor 3 |
| NR | XP_007157611.1 | 0 | hypothetical protein PHAVU_002G084000g [Phaseolus vulgaris] |
| Swissprot | tr|Q8LFV3|CDF3_ARATH | 2.00E-80 | Cyclic dof factor 3 |
| trEMBL | tr|V7CJX6|V7CJX6_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW29605.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00312 | 84941 | 88681 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000312s00021997.1 | PF02701.10 | zf-Dof | 142 | 202 | 2.50E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.482 |
| SRR1783600 | control | 5.539 |
| SRR1783602 | moderate drought stress | 8.268 |
| SRR1811619 | moderate drought stress | 8.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.100 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.993 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.481 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.499 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.322 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.428 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.825 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.210 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.694 |
| SRR2967015 | Control (Tissue:root) | 11.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.213 |
| SRR9715740 | Leave | 5.258 |
| SRR9715741 | Leave | 6.825 |
| SRR9715739 | Root | 0.780 |
| SRR9715742 | Root | 2.139 |
| SRR9715743 | Root | 1.685 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.007 |
| SRR8749028 | MeJA induced 9h | 7.034 |
| SRR8749029 | MeJA induced 9h | 7.533 |
| SRR8749030 | Uninduced | 4.476 |
| SRR8749031 | Uninduced | 14.344 |
| SRR8749032 | Uninduced | 10.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.775 |
| SRR8400027 | Control-Root | 2.198 |