Gene detail information of Glyur000312s00021999.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G69580.1 | 2.00E-39 | Homeodomain-like superfamily protein |
| NR | XP_006573113.1 | 5.63E-159 | PREDICTED: uncharacterized protein LOC100784670 isoform X2 [Glycine max] |
| Swissprot | tr|Q9SAK5|APL_ARATH | 1.00E-23 | Myb family transcription factor APL |
| trEMBL | tr|K7K1V4|K7K1V4_SOYBN | 3.00E-159 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G05920.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00312 | 109782 | 111760 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000312s00021999.1 | PF00249.26 | Myb_DNA-binding | 22 | 43 | 2.00E-05 |
| Glyur000312s00021999.1 | PF14379.1 | Myb_CC_LHEQLE | 124 | 169 | 5.10E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.912 |
| SRR1783600 | control | 4.048 |
| SRR1783602 | moderate drought stress | 3.527 |
| SRR1811619 | moderate drought stress | 3.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.856 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.704 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.173 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.281 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.748 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.341 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.910 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.909 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 27.001 |
| SRR2868004 | Drought Stress(Tissue:root) | 29.471 |
| SRR2967015 | Control (Tissue:root) | 36.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.571 |
| SRR9715740 | Leave | 7.886 |
| SRR9715741 | Leave | 8.431 |
| SRR9715739 | Root | 0.347 |
| SRR9715742 | Root | 4.143 |
| SRR9715743 | Root | 3.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.266 |
| SRR8749028 | MeJA induced 9h | 0.139 |
| SRR8749029 | MeJA induced 9h | 0.230 |
| SRR8749030 | Uninduced | 0.183 |
| SRR8749031 | Uninduced | 0.425 |
| SRR8749032 | Uninduced | 0.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.485 |
| SRR8400027 | Control-Root | 6.981 |