Gene detail information of Glyur000312s00022001.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G26800.1 | 4.00E-44 | RING/U-box superfamily protein |
| NR | KHN01234.1 | 7.76E-88 | E3 ubiquitin-protein ligase RING1 [Glycine soja] |
| Swissprot | tr|Q8LPN7|RNG1L_ARATH | 1.00E-24 | E3 ubiquitin-protein ligase RING1-like |
| trEMBL | tr|I3SF02|I3SF02_LOTJA | 3.00E-88 | Uncharacterized protein {ECO:0000313|EMBL:AFK38844.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00312 | 122653 | 123366 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000312s00022001.1 | PF13639.1 | zf-RING_2 | 121 | 163 | 8.60E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.804 |
| SRR1783600 | control | 9.210 |
| SRR1783602 | moderate drought stress | 8.103 |
| SRR1811619 | moderate drought stress | 7.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 44.016 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 44.685 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 290.641 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 280.988 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.194 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.247 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.008 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.776 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.359 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.060 |
| SRR2967015 | Control (Tissue:root) | 5.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.251 |
| SRR9715740 | Leave | 4.065 |
| SRR9715741 | Leave | 2.316 |
| SRR9715739 | Root | 5.249 |
| SRR9715742 | Root | 5.068 |
| SRR9715743 | Root | 5.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.625 |
| SRR8749028 | MeJA induced 9h | 40.924 |
| SRR8749029 | MeJA induced 9h | 32.510 |
| SRR8749030 | Uninduced | 6.505 |
| SRR8749031 | Uninduced | 14.012 |
| SRR8749032 | Uninduced | 38.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.637 |
| SRR8400027 | Control-Root | 0.000 |