Gene detail information of Glyur000313s00016908.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02030.1 | 3.00E-53 | POX (plant homeobox) family protein |
| NR | XP_008233506.1 | 3.85E-81 | PREDICTED: BEL1-like homeodomain protein 9 [Prunus mume] |
| Swissprot | tr|Q9LZM8|BLH9_ARATH | 1.00E-61 | BEL1-like homeodomain protein 9 |
| trEMBL | tr|B9SE26|B9SE26_RICCO | 1.00E-79 | Bel1 homeotic protein, putative {ECO:0000313|EMBL:EEF38169.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00313 | 26317 | 29121 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000313s00016908.1 | PF07526.6 | POX | 31 | 93 | 4.50E-22 |
| Glyur000313s00016908.1 | PF05920.6 | Homeobox_KN | 137 | 176 | 2.10E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.627 |
| SRR1783600 | control | 2.590 |
| SRR1783602 | moderate drought stress | 0.492 |
| SRR1811619 | moderate drought stress | 0.458 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.513 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.382 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.389 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.458 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.248 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.369 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.906 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.957 |
| SRR2967015 | Control (Tissue:root) | 1.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 1.168 |
| SRR9715742 | Root | 3.363 |
| SRR9715743 | Root | 2.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.897 |
| SRR8749028 | MeJA induced 9h | 0.074 |
| SRR8749029 | MeJA induced 9h | 0.058 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.475 |
| SRR8400027 | Control-Root | 6.535 |