Gene detail information of Glyur000313s00016915.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G05970.1 | 0 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_003518397.1 | 0 | PREDICTED: protein NEDD1-like [Glycine max] |
| COG | YP_003340218.1 | 2.00E-16 | hypothetical protein [Streptosporangium roseum DSM 43021] |
| Swissprot | tr|Q8W1K8|MUT11_CHLRE | 2.00E-09 | Protein Mut11 |
| trEMBL | tr|I1JI29|I1JI29_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G41880.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00313 | 68455 | 74076 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.069 |
| SRR1783600 | control | 11.601 |
| SRR1783602 | moderate drought stress | 9.063 |
| SRR1811619 | moderate drought stress | 8.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.105 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.074 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.657 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.495 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.351 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.246 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.654 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.290 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.952 |
| SRR2967015 | Control (Tissue:root) | 9.951 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.472 |
| SRR9715740 | Leave | 3.705 |
| SRR9715741 | Leave | 3.206 |
| SRR9715739 | Root | 4.888 |
| SRR9715742 | Root | 6.562 |
| SRR9715743 | Root | 6.412 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.057 |
| SRR8749028 | MeJA induced 9h | 9.334 |
| SRR8749029 | MeJA induced 9h | 8.800 |
| SRR8749030 | Uninduced | 4.222 |
| SRR8749031 | Uninduced | 3.305 |
| SRR8749032 | Uninduced | 2.822 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.054 |
| SRR8400027 | Control-Root | 13.016 |