Gene detail information of Glyur000314s00018003.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G20740.18.00E-66Tetraspanin family protein
NRXP_004514452.11.72E-144PREDICTED: tetraspanin-19-like [Cicer arietinum]
COGYP_004151149.15.00E-14ribosomal-protein-alanine acetyltransferase [Thermovibrio ammonificans HB-1]
Swissprottr|Q940P5|TET19_ARATH1.00E-95Tetraspanin-19
trEMBLtr|C6T4E1|C6T4E1_SOYBN1.00E-132Putative uncharacterized protein {ECO:0000313|EMBL:ACU16551.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003141124316652+


Gene family

Gene familysubfamily
Transcription Factors FamilyGNAT


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0008080  N-acetyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000314s00018003.1PF00583.19Acetyltransf_1541291.30E-15
Glyur000314s00018003.1PF00335.15Tetraspannin2523588.00E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.783
SRR1783600control22.930
SRR1783602moderate drought stress29.218
SRR1811619moderate drought stress28.776

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain32.897
DRR006520Root Summer glycyrrhizin high producing strain32.317
DRR006521Root Winter glycyrrhizin high producing strain42.875
DRR006522Root Winter glycyrrhizin high producing strain41.384
DRR006523Root Summer glycyrrhizin low producing strain44.604
DRR006524Root Summer glycyrrhizin low producing strain45.213
DRR006525Leaf Summer glycyrrhizin high producing strain26.724
DRR006526Leaf Summer glycyrrhizin high producing strain27.005

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)53.184
SRR2868004Drought Stress(Tissue:root)67.941
SRR2967015Control (Tissue:root)66.364

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave31.166
SRR9715740Leave36.778
SRR9715741Leave36.857
SRR9715739Root16.938
SRR9715742Root18.402
SRR9715743Root18.482

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h30.045
SRR8749028MeJA induced 9h24.683
SRR8749029MeJA induced 9h32.437
SRR8749030Uninduced26.366
SRR8749031Uninduced40.645
SRR8749032Uninduced32.824

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root44.084
SRR8400027Control-Root41.354

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved