Gene detail information of Glyur000315s00012742.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09530.2 | 7.00E-17 | phytochrome interacting factor 3 |
| NR | XP_006574517.1 | 2.57E-10 | PREDICTED: transcription factor PIL1-like [Glycine max] |
| Swissprot | tr|Q6AT90|APG_ORYSJ | 9.00E-20 | Transcription factor APG |
| trEMBL | tr|K7K5T8|K7K5T8_SOYBN | 1.00E-10 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G00981.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00315 | 1951 | 3810 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000315s00012742.2 | PF00010.21 | HLH | 22 | 61 | 2.40E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.737 |
| SRR1783600 | control | 1.086 |
| SRR1783602 | moderate drought stress | 0.436 |
| SRR1811619 | moderate drought stress | 0.687 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.197 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.138 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.070 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.552 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.236 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.334 |
| SRR2967015 | Control (Tissue:root) | 0.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.114 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.039 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.037 |
| SRR8400027 | Control-Root | 0.011 |