Gene detail information of Glyur000315s00012751.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G01690.10Flavin containing amine oxidoreductase family
NRXP_004495854.10PREDICTED: protoporphyrinogen oxidase, chloroplastic-like [Cicer arietinum]
COGYP_007116263.11.00E-141protoporphyrinogen oxidase [Oscillatoria nigro-viridis PCC 7112]
Swissprottr|P55826|PPOC_ARATH0Protoporphyrinogen oxidase 1, chloroplastic (Precursor)
trEMBLtr|V7BGU5|V7BGU5_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW17082.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003153265337625+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00231PPOX, hemY EC:1.3.3.4 1.3.3.15 Porphyrin and chlorophyll metabolism map00860


Gene Ontology

biological_process

GO:0006779  porphyrin-containing compound biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004729  oxygen-dependent protoporphyrinogen oxidase activity

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000315s00012751.1PF01593.19Amino_oxidase855488.10E-60


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.861
SRR1783600control14.955
SRR1783602moderate drought stress8.702
SRR1811619moderate drought stress8.588

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.553
DRR006520Root Summer glycyrrhizin high producing strain6.484
DRR006521Root Winter glycyrrhizin high producing strain2.598
DRR006522Root Winter glycyrrhizin high producing strain2.481
DRR006523Root Summer glycyrrhizin low producing strain7.032
DRR006524Root Summer glycyrrhizin low producing strain7.205
DRR006525Leaf Summer glycyrrhizin high producing strain21.709
DRR006526Leaf Summer glycyrrhizin high producing strain20.853

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.432
SRR2868004Drought Stress(Tissue:root)8.647
SRR2967015Control (Tissue:root)8.221

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.454
SRR9715740Leave26.758
SRR9715741Leave15.791
SRR9715739Root11.454
SRR9715742Root9.534
SRR9715743Root8.658

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.708
SRR8749028MeJA induced 9h8.070
SRR8749029MeJA induced 9h12.578
SRR8749030Uninduced1.869
SRR8749031Uninduced1.230
SRR8749032Uninduced3.524

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.433
SRR8400027Control-Root24.856

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved