Gene detail information of Glyur000315s00012767.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G62150.10P-glycoprotein 21
NRXP_003535294.10PREDICTED: ABC transporter B family member 21-like isoform X1 [Glycine max]
COGYP_003998950.15.00E-115ABC transporter related protein [Leadbetterella byssophila DSM 17132]
Swissprottr|Q9FWX7|AB11B_ARATH0ABC transporter B family member 11
trEMBLtr|K7LJ97|K7LJ97_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G27790.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003159194898360-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05658ABCB1, CD243 EC:3.6.3.44 ABC transporters map02010
Bile secretionmap04976
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006810  transport

GO:0055085  transmembrane transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0005524  ATP binding

GO:0016887  ATPase activity

GO:0042626  ATPase activity, coupled to transmembrane movement of substances

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000315s00012767.1PF00664.18ABC_membrane643384.30E-55
Glyur000315s00012767.1PF00005.22ABC_tran4045521.80E-32
Glyur000315s00012767.1PF00664.18ABC_membrane7189891.70E-50
Glyur000315s00012767.1PF00005.22ABC_tran105912087.80E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control62.620
SRR1783600control63.238
SRR1783602moderate drought stress51.540
SRR1811619moderate drought stress51.503

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.353
DRR006520Root Summer glycyrrhizin high producing strain21.999
DRR006521Root Winter glycyrrhizin high producing strain2.291
DRR006522Root Winter glycyrrhizin high producing strain2.245
DRR006523Root Summer glycyrrhizin low producing strain52.869
DRR006524Root Summer glycyrrhizin low producing strain53.218
DRR006525Leaf Summer glycyrrhizin high producing strain10.147
DRR006526Leaf Summer glycyrrhizin high producing strain10.109

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)86.901
SRR2868004Drought Stress(Tissue:root)132.372
SRR2967015Control (Tissue:root)79.209

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave20.416
SRR9715740Leave20.748
SRR9715741Leave27.124
SRR9715739Root24.399
SRR9715742Root117.541
SRR9715743Root100.012

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h75.793
SRR8749028MeJA induced 9h149.906
SRR8749029MeJA induced 9h98.162
SRR8749030Uninduced174.142
SRR8749031Uninduced142.142
SRR8749032Uninduced140.121

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root189.810
SRR8400027Control-Root151.461

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved