Gene detail information of Glyur000316s00018272.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G19360.1 | 4.00E-76 | Zinc finger (CCCH-type) family protein |
| NR | XP_007154979.1 | 0 | hypothetical protein PHAVU_003G162600g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LT81|C3H39_ARATH | 7.00E-97 | Zinc finger CCCH domain-containing protein 39 |
| trEMBL | tr|V7CC96|V7CC96_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW26973.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00316 | 86516 | 88620 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000316s00018272.1 | PF00642.19 | zf-CCCH | 81 | 105 | 1.40E-05 |
| Glyur000316s00018272.1 | PF00642.19 | zf-CCCH | 142 | 165 | 1.70E-06 |
| Glyur000316s00018272.1 | PF00642.19 | zf-CCCH | 230 | 256 | 6.80E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.506 |
| SRR1783600 | control | 3.599 |
| SRR1783602 | moderate drought stress | 2.113 |
| SRR1811619 | moderate drought stress | 2.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.769 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.413 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.658 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.679 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.860 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.547 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.722 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.023 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.131 |
| SRR2967015 | Control (Tissue:root) | 2.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.694 |
| SRR9715740 | Leave | 0.792 |
| SRR9715741 | Leave | 1.217 |
| SRR9715739 | Root | 1.947 |
| SRR9715742 | Root | 5.640 |
| SRR9715743 | Root | 4.463 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.519 |
| SRR8749028 | MeJA induced 9h | 6.909 |
| SRR8749029 | MeJA induced 9h | 4.376 |
| SRR8749030 | Uninduced | 1.850 |
| SRR8749031 | Uninduced | 0.298 |
| SRR8749032 | Uninduced | 0.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.262 |
| SRR8400027 | Control-Root | 3.430 |