Gene detail information of Glyur000316s00018273.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G20070.17.00E-155nudix hydrolase homolog 19
NRACU18695.10unknown [Glycine max]
COGYP_003696359.16.00E-48NAD(+) diphosphatase [Starkeya novella DSM 506]
Swissprottr|Q94A82|NUD19_ARATH0Nudix hydrolase 19, chloroplastic (Precursor)
trEMBLtr|C6TA43|C6TA43_SOYBN0Putative uncharacterized protein {ECO:0000313|EMBL:ACU18695.1} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003168962393299+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03426E3.6.1.22, NUDT12, nudC EC:3.6.1.22 Nicotinate and nicotinamide metabolism map00760
Peroxisomemap04146


Gene Ontology

molecular_function

GO:0016787  hydrolase activity

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000316s00018273.1PF09296.6NUDIX-like501651.40E-10
Glyur000316s00018273.1PF09297.6zf-NADH-PPase1702002.00E-06
Glyur000316s00018273.1PF00293.23NUDIX2103246.10E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.240
SRR1783600control2.251
SRR1783602moderate drought stress1.980
SRR1811619moderate drought stress2.071

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.238
DRR006520Root Summer glycyrrhizin high producing strain1.175
DRR006521Root Winter glycyrrhizin high producing strain9.520
DRR006522Root Winter glycyrrhizin high producing strain9.095
DRR006523Root Summer glycyrrhizin low producing strain2.793
DRR006524Root Summer glycyrrhizin low producing strain2.533
DRR006525Leaf Summer glycyrrhizin high producing strain4.367
DRR006526Leaf Summer glycyrrhizin high producing strain4.242

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.587
SRR2868004Drought Stress(Tissue:root)13.137
SRR2967015Control (Tissue:root)13.967

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.337
SRR9715740Leave9.373
SRR9715741Leave15.671
SRR9715739Root1.241
SRR9715742Root3.389
SRR9715743Root4.111

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.748
SRR8749028MeJA induced 9h10.259
SRR8749029MeJA induced 9h4.466
SRR8749030Uninduced14.669
SRR8749031Uninduced12.575
SRR8749032Uninduced8.666

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.788
SRR8400027Control-Root6.974

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved