Gene detail information of Glyur000316s00018286.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G58570.10P-loop containing nucleoside triphosphate hydrolases superfamily protein
NRXP_004508511.10PREDICTED: DEAD-box ATP-dependent RNA helicase 52-like [Cicer arietinum]
COGYP_004694085.12.00E-97DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp. Is79A3]
Swissprottr|Q6Z4K6|RH52B_ORYSJ0DEAD-box ATP-dependent RNA helicase 52B
trEMBLtr|G7JCV9|G7JCV9_MEDTR0DEAD-box ATP-dependent RNA helicase-like protein {ECO:0000313|EMBL:AES91491.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00316149317152214+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11594DDX3X, bel EC:3.6.4.13 RIG-I-like receptor signaling pathway map04622
Viral carcinogenesismap05203
Hepatitis Bmap05161


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000316s00018286.1PF00270.24DEAD1523387.00E-47
Glyur000316s00018286.1PF00271.26Helicase_C4134881.80E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.371
SRR1783600control7.434
SRR1783602moderate drought stress4.860
SRR1811619moderate drought stress4.604

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.525
DRR006520Root Summer glycyrrhizin high producing strain7.537
DRR006521Root Winter glycyrrhizin high producing strain4.441
DRR006522Root Winter glycyrrhizin high producing strain4.306
DRR006523Root Summer glycyrrhizin low producing strain13.028
DRR006524Root Summer glycyrrhizin low producing strain12.519
DRR006525Leaf Summer glycyrrhizin high producing strain5.909
DRR006526Leaf Summer glycyrrhizin high producing strain6.023

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.742
SRR2868004Drought Stress(Tissue:root)14.303
SRR2967015Control (Tissue:root)9.284

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.660
SRR9715740Leave6.131
SRR9715741Leave4.662
SRR9715739Root6.154
SRR9715742Root16.471
SRR9715743Root14.018

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.952
SRR8749028MeJA induced 9h9.999
SRR8749029MeJA induced 9h4.304
SRR8749030Uninduced2.994
SRR8749031Uninduced0.315
SRR8749032Uninduced0.679

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.948
SRR8400027Control-Root7.184

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved