Gene detail information of Glyur000317s00022161.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G15670.12.00E-88Galactose oxidase/kelch repeat superfamily protein
NRKEH28766.10galactose oxidase/kelch repeat protein [Medicago truncatula]
Swissprottr|Q9LMR5|FK126_ARATH2.00E-126F-box/kelch-repeat protein At1g15670
trEMBLtr|A0A072UH78|A0A072UH78_MEDTR0Galactose oxidase/kelch repeat protein {ECO:0000313|EMBL:KEH28766.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003172502126091+


Gene family

Gene familysubfamily
Ubiquitin FamilyF-box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000317s00022161.1PF00646.28F-box4440.0002
Glyur000317s00022161.1PF13964.1Kelch_61091569.80E-08
Glyur000317s00022161.1PF01344.20Kelch_11672011.10E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.403
SRR1783600control2.482
SRR1783602moderate drought stress2.762
SRR1811619moderate drought stress2.410

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.077
DRR006520Root Summer glycyrrhizin high producing strain7.133
DRR006521Root Winter glycyrrhizin high producing strain0.338
DRR006522Root Winter glycyrrhizin high producing strain0.407
DRR006523Root Summer glycyrrhizin low producing strain3.681
DRR006524Root Summer glycyrrhizin low producing strain3.776
DRR006525Leaf Summer glycyrrhizin high producing strain3.132
DRR006526Leaf Summer glycyrrhizin high producing strain2.514

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.578
SRR2868004Drought Stress(Tissue:root)35.490
SRR2967015Control (Tissue:root)24.742

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.305
SRR9715740Leave8.159
SRR9715741Leave7.575
SRR9715739Root7.207
SRR9715742Root9.862
SRR9715743Root8.709

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.723
SRR8749028MeJA induced 9h2.179
SRR8749029MeJA induced 9h2.654
SRR8749030Uninduced0.421
SRR8749031Uninduced0.117
SRR8749032Uninduced1.460

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.649
SRR8400027Control-Root9.150

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved