Gene detail

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Gene detail information of Glyur000317s00022171.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G52360.1	0	Coatomer, beta' subunit
NR	KHN47803.1	0	Coatomer subunit beta'-2 [Glycine soja]
COG	YP_003890644.1	6.00E-36	WD40 repeat-containing protein [Cyanothece sp. PCC 7822]
Swissprot	tr\|Q9C827\|COB22_ARATH	0	Coatomer subunit beta'-2
trEMBL	tr\|I1KV92\|I1KV92_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G22140.1}

Sequence

Transcript Sequence

>Glyur000317s00022171.1
ATGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCGCAAAGATCAGAAAGAGTAAAGTCTGTGGATCTACATCCAACAGAACCATGGATTCTAGCAAGTTTATACTCTGGAACTGTCTGTATCTGGAACTACCAATCTCAGACCATGGCCAAGTCTTTTGAGGTTACTGAGTTACCAGTTAGGTCAGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCCGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAAAGTATTTGAGGCACATACAGATTACATTAGGTGTGTGGCTGTTCATCCTAACCTTCCTTATGTGCTGTCATCTTCTGATGATATGCTCATAAAGCTTTGGGATTGGGAAAAAGGCTGGATCTGTACCCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTCAATCCTAAAGATACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGATTTGGAATCTTGGCTCTCCTGACCCAAATTTTACGTTGGATGCCCATCAAAAAGGAGTAAATTGTGTTGATTACTTTACTGGTGGTGACAAACCTTATCTAATTACTGGTTCTGATGATCACACTGCCAAGGTATGGGATTATCAGACCAAAAGTTGTGTTCAGACTCTAGAAGGTCACACTCACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGCTCTGAGGATGGTACAGTGCGCATTTGGCATTCAACAACTTATAGGCTTGAGAACACATTGAACTATGGTCTTGAAAGAGTTTGGGCTATTGGATACCTGAAGAGTTCACGTCGGGTTGTGATTGGCTATGATGAAGGTACTATTATGGTCAAACTTGGTCGAGAAGAACCTGTAGCTAGCATGGACAACAGTGGGAAGATCATTTGGGCTAAGCANAATGAGATTCAAACTGTCAATATCAGAAGTGTAGGAGCAGATGTGGAGATTGGTGATGGAGAAAGGTTACCGTTGGCTGTTAAGGAGCTGGGCACCTGTGATCTCTATCCACAAAGTTTAAAGCACAATCCAAATGGGAGGTTTGTTGTTGTTTGTGGGGATGGTGAATATATTATATACACTGCTTTGGCATGGAGAAATAGGTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCGGATGGAGAGTATGCTGTAAGAGAAAGTACATCAAAGATTAAAATTTTCAGCAAAACTTTCCAGGAAAAAAAGAGTATCCGACCGACTTTCTCAGCTGAACGAATATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGCATTGATGTTAATGTGAAAAACCTCTACTGGGCTGACAGCGGTGATCTAGTGACGATTGCTAGTGATACATCATTCTATATTCTAAAGTACAATCGTGATGTTGTTGCATCATATTTAGATAGTGGAATACCTGTGGATGAGCAAGGTGTTGAAGATGCCTTTGAGCTCCTTCACGAAATGAATGAACGTGTCAGGACAGGGATCTGGGTTGGGGATTGTTTTATCTACAACAATTCTTCTTGGAGGCTTAATTACTGTGTTGGTGGTAACTACGATGTTTCACTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAATGTTGTGGGATACACACTGCTTTTAAGCTTGATTGAGTACAAGACTCTTGTGATGCGTGGTGATTTAGAAAGGGCGAATGAAATTCTACCATCAATTCCGAAAGAGCATCATAACAGTGTGGCTCACTTCCTGGAATCTCGAGGGATGATAGAGGATGCTCTTGAAGTAGCTACTGACCCTGACTACAGGTTTGATCTAGCCATACAGCTTGGAAGATTAGAGGTTGCAAAGGGTATTGCTATGGAAGTGCATAGTGAGTCTAAATGGAAGCAGTTGGGAGAATTAGCTATGTCTACTGGAAAGTTAGAAATGGCTGAGGAGTGTTTAAAACATGCAATGGATTTGAGTGGGTTGCTGCTGCTATATTCTTCTTTAGGAGATGCTGAAGGAATATCAAAACTAGCTACTCTTGCTAAAGAGCAAGGGAAGAACAATGTTGCATTCCTTTGCTTATTTACGTTGGGTAAACTTGAAGACTGCCTTCAATTGTTGGTAGAAAGCAATCGCATTCCAGAGGCTGCTTTGATGGCTCGATCATATCTCCCAAGCAAGGTCTCAGAGATAGTGACAATTTGGAGAAAAGATCTTTGCAAGGAGTATCCTAATTTGTTTGACGATTGGCAAGTTGCACTTGCTGTTGAATCTAAAGCTGCAGAAACAAGGGGCGTTTACCCTCCTGCAGAGGAGTATGTCAACCATGCTGATAAGTCACACGTCACCCTTGTTGAAGCTTTCAGAAGTATGCAGATCGAAGAAGGGGAGCAGCCTCTTGAGAATGGGGACTCTAATCATGAGTTGACTGAACAAAATGGAGAAGAGGATNATACAGAGGGACAGGAGGAACAGAATGGAGAGGANGGAAGCCAAGAGGAGGCAGTTGTAGTGGATGCCGATTCTACTGATGGCGCAGTCCTCGTTAATGGTAACGAGGCTGATGAAGAGTGGGATACGAATAAAGGAGAAGGAGGAGCCCCGCCAGCCTGAAAACAATTGGTTTGGACAGAGTGAAGATCGAAATTTTGTCTCTGGTGATTGATTGTTTGATGTTTCTGATGTGCCTTTTCTAACTCCTATTTTGACTATTAGCTATTTTTAATATAACACTACTTCTACCCCCCCCCCCCTACCAATTCTAGTTTTTTTTTTTGGTGTATCATATATTTTTCCACAACTAGGCTGTATATTTGGGAATTAGAGATTAGAGATGAAATTATAAAGTTAGGTCCATTGTCAGTAGCGAATATAATTGACACCAAATCTCCTAACTCATGGCCTACTTTTTCTATATTTTTTGTACGGCGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00317	69294	82464	-

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0016192 vesicle-mediated transport

cellular_component GO:0030117 membrane coat molecular_function GO:0005198 structural molecule activity GO:0005515 protein binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000317s00022171.1	PF00400.27	WD40	91	127	1.80E-10
Glyur000317s00022171.1	PF00400.27	WD40	132	171	3.90E-10
Glyur000317s00022171.1	PF00400.27	WD40	179	215	9.90E-08
Glyur000317s00022171.1	PF00400.27	WD40	220	257	1.20E-13
Glyur000317s00022171.1	PF04053.9	Coatomer_WDAD	320	751	1.20E-146

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.604
SRR1783600	control	27.506
SRR1783602	moderate drought stress	30.881
SRR1811619	moderate drought stress	30.739

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.614
DRR006520	Root Summer glycyrrhizin high producing strain	42.025
DRR006521	Root Winter glycyrrhizin high producing strain	47.407
DRR006522	Root Winter glycyrrhizin high producing strain	46.388
DRR006523	Root Summer glycyrrhizin low producing strain	37.127
DRR006524	Root Summer glycyrrhizin low producing strain	36.657
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.658
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.538

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	65.205
SRR2868004	Drought Stress(Tissue:root)	56.415
SRR2967015	Control (Tissue:root)	56.319

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	34.201
SRR9715740	Leave	40.547
SRR9715741	Leave	41.042
SRR9715739	Root	12.457
SRR9715742	Root	51.968
SRR9715743	Root	45.622

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	63.701
SRR8749028	MeJA induced 9h	69.743
SRR8749029	MeJA induced 9h	49.713
SRR8749030	Uninduced	30.074
SRR8749031	Uninduced	27.780
SRR8749032	Uninduced	23.318

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	60.609
SRR8400027	Control-Root	61.374