Gene detail

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Gene detail information of Glyur000319s00018959.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G60220.1	2.00E-30	TOXICOS EN LEVADURA 4
NR	XP_003530107.1	1.75E-154	PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Glycine max]
Swissprot	tr\|Q9LY41\|ATL4_ARATH	1.00E-73	E3 ubiquitin-protein ligase ATL4
trEMBL	tr\|K7L126\|K7L126_SOYBN	7.00E-155	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G12990.2}

Sequence

Transcript Sequence

>Glyur000319s00018959.1
ATGGCTTCTTCTTTTTCTACTTCTCCTCCTCCTCCACCTGTGNCACTAAACGTCGTCGGATCAGACACGTTTGGAACAGTTTCTTCTAGTCCCATTGTAGTTTCACCGCCGTCACCTCGCCGTTCGTCTCCGTTACAGAACCTTAGCCCAAGCATTCTCATAATCGTAACGGTCTTAGCCGTCACCGTCATCGTGTCACTNGCGCTCTGCTNCCTCCTCCGCCACCTCAACCGCCGCTGTCTCCGCCGTCTCTCCGCCGATCCCTCCGCCGCCACGACGCCGATCTTCGGCTCCGGACGCCGCGTCTCCCCGGAGGTCCCTTCCTCNGTCATNGACTCGCTCCCTCTGTTCACCTTCTCNGCCGTCACTCGTCGCTCCGCCGCCGCCGCNGCCGACTGCGCCGTGTGCCTCTCGAAATTCCACAACAACGANCTCCTCCGCCTCCTCCCTCTCTGCTGCCACGCCTTCCACGCCGAGTGCATCGACACGTGGCTCCGCTCCAACCTCTCATGTCCGCTCTGCCGCTCCGCCATTTTCGCCGCCGACTCGGACCTCGCCAAGGTTCTCCGATCGCCGTCGTCTGACAGCTTCCGCCTAGAGATAGGAAACGTTAGCCGCCGTGGAACCAACTCCGACNCCGCCGGCGACGCGCGCGGCGGCGACTCGAGGTCCTATTCCATTGGATCGTTCGAGTATTTGGTGGAGGAGGAATCGGAGGTTCCGTTCAGCCACGCTCACCGGAGAAGCGTCTCCGATCAGAAGGACGTTCCNGCGCCGGCGGATTATCCGGCGACGAACGAGGCCGCACTTGCCGGCGAGGTTGCCGGCGTTAGAAACTGGCTGAAGGAGTACGTGGATNGGGTATCGGCTTCTATTTCGTCTCGAACGGCGTCGTTTCGAAGCTCTGGAAGGTTCTTCAGTGGTGGAAGTAGTCGCCGAAGCGACGTCGTTCCTGTCGCCGTGGATTATGACGTGGAAGGTAACCGAATTGGTGAGGAGATTACCGAAATGTTTCGTTGGCTTTCAGGGGTATAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00319	23878	24912	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000319s00018959.1	PF13639.1	zf-RING_2	132	175	7.50E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.907
SRR1783600	control	0.882
SRR1783602	moderate drought stress	0.291
SRR1811619	moderate drought stress	0.246

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.734
DRR006520	Root Summer glycyrrhizin high producing strain	1.039
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.637
DRR006524	Root Summer glycyrrhizin low producing strain	0.426
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.557
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.590

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.434
SRR2868004	Drought Stress(Tissue:root)	2.650
SRR2967015	Control (Tissue:root)	2.275

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.610
SRR9715740	Leave	0.122
SRR9715741	Leave	0.710
SRR9715739	Root	1.074
SRR9715742	Root	1.270
SRR9715743	Root	1.174

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.137
SRR8749028	MeJA induced 9h	0.129
SRR8749029	MeJA induced 9h	0.075
SRR8749030	Uninduced	0.031
SRR8749031	Uninduced	0.037
SRR8749032	Uninduced	0.154

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.547
SRR8400027	Control-Root	1.467