Gene detail information of Glyur000319s00018964.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G05170.10vacuolar protein sorting 11
NRXP_004516854.10PREDICTED: vacuolar protein sorting-associated protein 11 homolog [Cicer arietinum]
Swissprottr|Q9SJ40|VPS11_ARATH0Vacuolar protein-sorting-associated protein 11 homolog
trEMBLtr|G7I3K9|G7I3K9_MEDTR0Vacuolar protein sorting-associated-like protein {ECO:0000313|EMBL:AES59444.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003194489149321+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006886  intracellular protein transport

GO:0016192  vesicle-mediated transport


molecular_function

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000319s00018964.1PF00637.15Clathrin4075301.50E-13
Glyur000319s00018964.1PF12451.3VPS11_C8759226.30E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control15.025
SRR1783600control15.159
SRR1783602moderate drought stress14.204
SRR1811619moderate drought stress14.001

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.258
DRR006520Root Summer glycyrrhizin high producing strain18.867
DRR006521Root Winter glycyrrhizin high producing strain8.563
DRR006522Root Winter glycyrrhizin high producing strain8.787
DRR006523Root Summer glycyrrhizin low producing strain15.990
DRR006524Root Summer glycyrrhizin low producing strain15.856
DRR006525Leaf Summer glycyrrhizin high producing strain7.591
DRR006526Leaf Summer glycyrrhizin high producing strain7.225

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)26.342
SRR2868004Drought Stress(Tissue:root)22.809
SRR2967015Control (Tissue:root)23.614

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.999
SRR9715740Leave12.113
SRR9715741Leave12.630
SRR9715739Root3.155
SRR9715742Root16.785
SRR9715743Root14.667

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.863
SRR8749028MeJA induced 9h13.894
SRR8749029MeJA induced 9h3.016
SRR8749030Uninduced3.825
SRR8749031Uninduced3.732
SRR8749032Uninduced2.438

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.637
SRR8400027Control-Root23.219

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved