Gene detail information of Glyur000319s00018974.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G37850.1 | 2.00E-25 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_006583521.1 | 1.34E-52 | PREDICTED: transcription factor bHLH18-like [Glycine max] |
| Swissprot | tr|Q9T072|BH025_ARATH | 1.00E-35 | Transcription factor bHLH25 |
| trEMBL | tr|K7L157|K7L157_SOYBN | 5.00E-53 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G13511.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00319 | 89950 | 93196 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000319s00018974.1 | PF00010.21 | HLH | 156 | 201 | 7.30E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.084 |
| SRR1783600 | control | 1.094 |
| SRR1783602 | moderate drought stress | 2.278 |
| SRR1811619 | moderate drought stress | 2.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.114 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.113 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.012 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.733 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.253 |
| SRR2967015 | Control (Tissue:root) | 13.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.071 |
| SRR9715740 | Leave | 0.046 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.470 |
| SRR9715743 | Root | 1.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.602 |
| SRR8400027 | Control-Root | 27.200 |