Gene detail information of Glyur000319s00018993.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G80600.13.00E-172HOPW1-1-interacting 1
NRXP_003529021.10PREDICTED: acetylornithine aminotransferase, mitochondrial-like isoform X1 [Glycine max]
COGYP_001275205.15.00E-133acetylornithine and succinylornithine aminotransferase [Roseiflexus sp. RS-1]
Swissprottr|O04866|ARGD_ALNGL0Acetylornithine aminotransferase, mitochondrial (Precursor)
trEMBLtr|K7L145|K7L145_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G13320.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00319181203185434-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00818E2.6.1.11, argD EC:2.6.1.11 2-Oxocarboxylic acid metabolism map01210
Biosynthesis of amino acidsmap01230
Arginine biosynthesismap00220


Gene Ontology

biological_process

GO:0006525  arginine metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0008483  transaminase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000319s00018993.1PF00202.16Aminotran_3904125.30E-103


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control34.551
SRR1783600control34.634
SRR1783602moderate drought stress32.329
SRR1811619moderate drought stress32.039

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.519
DRR006520Root Summer glycyrrhizin high producing strain34.037
DRR006521Root Winter glycyrrhizin high producing strain6.745
DRR006522Root Winter glycyrrhizin high producing strain6.928
DRR006523Root Summer glycyrrhizin low producing strain32.609
DRR006524Root Summer glycyrrhizin low producing strain32.342
DRR006525Leaf Summer glycyrrhizin high producing strain22.209
DRR006526Leaf Summer glycyrrhizin high producing strain21.745

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.957
SRR2868004Drought Stress(Tissue:root)23.695
SRR2967015Control (Tissue:root)21.001

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.899
SRR9715740Leave19.636
SRR9715741Leave19.166
SRR9715739Root29.388
SRR9715742Root37.841
SRR9715743Root32.306

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.566
SRR8749028MeJA induced 9h16.629
SRR8749029MeJA induced 9h10.023
SRR8749030Uninduced4.467
SRR8749031Uninduced1.521
SRR8749032Uninduced2.101

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root37.510
SRR8400027Control-Root43.132

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved