Gene detail information of Glyur000320s00014321.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G63490.10transcription factor jumonji (jmjC) domain-containing protein
NRXP_006590520.10PREDICTED: lysine-specific demethylase 5A-like [Glycine max]
Swissprottr|C0SUT9|JMJ16_ARATH7.00E-89Putative lysine-specific demethylase JMJ16
trEMBLtr|K7LMP3|K7LMP3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G02580.4}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003207076987621+


Gene family

Gene familysubfamily
Transcription Factors FamilyARID
EAR motif-containing ProteinsARID


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0016706  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000320s00014321.1PF02375.12JmjN29623.90E-15
Glyur000320s00014321.1PF01388.16ARID1181853.80E-10
Glyur000320s00014321.1PF00628.24PHD2372842.40E-09
Glyur000320s00014321.1PF02373.17JmjC4085243.90E-42
Glyur000320s00014321.1PF02928.11zf-C5HC26186703.60E-15
Glyur000320s00014321.1PF08429.6PLU-190211476.40E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.478
SRR1783600control6.518
SRR1783602moderate drought stress7.242
SRR1811619moderate drought stress7.352

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.936
DRR006520Root Summer glycyrrhizin high producing strain6.967
DRR006521Root Winter glycyrrhizin high producing strain10.665
DRR006522Root Winter glycyrrhizin high producing strain10.323
DRR006523Root Summer glycyrrhizin low producing strain7.601
DRR006524Root Summer glycyrrhizin low producing strain7.784
DRR006525Leaf Summer glycyrrhizin high producing strain7.061
DRR006526Leaf Summer glycyrrhizin high producing strain7.073

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)26.632
SRR2868004Drought Stress(Tissue:root)28.661
SRR2967015Control (Tissue:root)33.355

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.105
SRR9715740Leave17.631
SRR9715741Leave22.326
SRR9715739Root1.470
SRR9715742Root14.592
SRR9715743Root13.147

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.726
SRR8749028MeJA induced 9h23.770
SRR8749029MeJA induced 9h17.248
SRR8749030Uninduced12.284
SRR8749031Uninduced16.496
SRR8749032Uninduced12.042

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.534
SRR8400027Control-Root21.731

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved