Gene detail information of Glyur000320s00014331.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G63440.10heavy metal atpase 5
NRAET04016.20heavy metal P-type ATPase [Medicago truncatula]
COGYP_003967624.10copper-translocating P-type ATPase [Ilyobacter polytropus DSM 2926]
Swissprottr|Q9SH30|HMA5_ARATH0Probable copper-transporting ATPase HMA5
trEMBLtr|G7LFM9|G7LFM9_MEDTR0Heavy metal P-type ATPase {ECO:0000313|EMBL:AET04016.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00320133333141436-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K17686copA, ATP7 EC:3.6.3.54 MAPK signaling pathway - plant map04016
Platinum drug resistancemap01524


Gene Ontology

biological_process

GO:0030001  metal ion transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0000166  nucleotide binding

GO:0005507  copper ion binding

GO:0046872  metal ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000320s00014331.1PF00403.21HMA531146.30E-15
Glyur000320s00014331.1PF00403.21HMA1331921.70E-07
Glyur000320s00014331.1PF00122.15E1-E2_ATPase4066463.60E-52
Glyur000320s00014331.1PF00702.21Hydrolase6508491.80E-39


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.231
SRR1783600control9.273
SRR1783602moderate drought stress8.264
SRR1811619moderate drought stress8.337

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain31.999
DRR006520Root Summer glycyrrhizin high producing strain31.534
DRR006521Root Winter glycyrrhizin high producing strain1.127
DRR006522Root Winter glycyrrhizin high producing strain1.048
DRR006523Root Summer glycyrrhizin low producing strain12.557
DRR006524Root Summer glycyrrhizin low producing strain12.660
DRR006525Leaf Summer glycyrrhizin high producing strain0.136
DRR006526Leaf Summer glycyrrhizin high producing strain0.137

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)55.013
SRR2868004Drought Stress(Tissue:root)39.879
SRR2967015Control (Tissue:root)46.939

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.087
SRR9715740Leave0.078
SRR9715741Leave0.096
SRR9715739Root4.105
SRR9715742Root10.165
SRR9715743Root9.245

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.182
SRR8749028MeJA induced 9h0.159
SRR8749029MeJA induced 9h0.049
SRR8749030Uninduced0.071
SRR8749031Uninduced0.033
SRR8749032Uninduced0.114

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.556
SRR8400027Control-Root9.250

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved