Gene detail information of Glyur000321s00019395.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45190.1 | 1.00E-60 | Plant-specific transcription factor YABBY family protein |
| NR | XP_003549900.1 | 5.19E-136 | PREDICTED: protein YABBY 4-like [Glycine max] |
| Swissprot | tr|O22152|YAB1_ARATH | 4.00E-80 | Axial regulator YABBY 1 |
| trEMBL | tr|I1MUX5|I1MUX5_SOYBN | 2.00E-136 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G14710.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00321 | 57034 | 59949 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-YABBY |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000321s00019395.1 | PF04690.8 | YABBY | 18 | 183 | 8.40E-69 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.127 |
| SRR1783600 | control | 0.131 |
| SRR1783602 | moderate drought stress | 1.263 |
| SRR1811619 | moderate drought stress | 1.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.872 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.351 |
| SRR9715740 | Leave | 1.391 |
| SRR9715741 | Leave | 1.591 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 3.841 |
| SRR9715743 | Root | 3.180 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.163 |
| SRR8400027 | Control-Root | 3.690 |