Gene detail

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Gene detail information of Glyur000321s00019398.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G12240.1	0	Glycosyl hydrolases family 32 protein
NR	P29001.1	0	RecName: Full=Acid beta-fructofuranosidase; AltName: Full=Acid invertase; Short=AI; AltName: Full=Acid sucrose hydrolase; AltName: Full=Vacuolar invertase; Contains: RecName: Full=Acid beta-fructofuranosidase 30 kDa subunit; Contains: RecName: Full=Acid beta-fructofuranosidase 38 kDa subunit; Flags: Precursor [Vigna radiata var. radiata]
COG	YP_001792320.1	7.00E-49	Beta-fructofuranosidase [Leptothrix cholodnii SP-6]
Swissprot	tr\|P29001\|INVA_VIGRR	0	Acid beta-fructofuranosidase 38 kDa subunit (Precursor)
trEMBL	tr\|H9BP09\|H9BP09_KUMST	0	Acid invertase {ECO:0000313\|EMBL:AFD62255.1}

Sequence

Transcript Sequence

>Glyur000321s00019398.1
ATGAACAGCCACAACGCTTCCGAAGACTCCCCCNACGCTCCCCTACTCCATGATGGGCCCCACAACCACCCCTGCAGACACCGCAAGGAGCTCCCTCTCATTGTTTTTGGGCTGCTCTTACTCGCTTCCCTCGTCGCCTTTAGTGGCTACAGGGCCTCTAACTATAACGCACGTGATCCCACTCGTGCTGACGTGTCATCCTCGACAAAGAACCCGAACCCGATCGTGCCTTCGTCGAAATGGCACCCGGTTTCGCGGGGTGTCTCCGCAGGTGTGTCGGAGAAGTCAAACCGGTTGTTCGCCGGCAAGGCCGGAGACACAGAATCTTTTCCTTGGAACAACAGCATGTTGTCGTGGCAGAGAACAGCNTACCATTTCCAGCCAGAGAAGAACTGGATGAATGGTCCCATGTACTACAAGGGATGGTACCATTTTTTCTACCAGTACAACCCAAACAGTGCAGTTTGGGGTGACATAGTTTGGGGACACGCCGTGTCAAGGGACATNATTCATTGGCTTCACCTCCCACTAGCAATGGTGGCTGATCAATGGTACGACATCANGGGTGTGTGGACAGGCTCTGCCACAATCTTACCCAACGGCCAAGTCATCATGCTATACACAGGTTCCACCAACGAATCGGTGCAAGTTCAGAACCTTGCTTACCCTGCTNACCCTTCTGACCCTCTCCTTGTGGATTGGATCAAATACCCTAACAACCCTGTTCTGTTCCCTCCACCTGGCATTGGTTCCAAGGACTTCCGTGACCCAACCACTGCTTGGCTCACCTCTGAAGGAAAATGGCGCATCACCATTGGTTCCAAGCTTAACAAAACGGGAATTGCCCTTGTTTATGACACAGAGGACTTCAAATCCTATGAGCTTAAGGAGGATTTGCTTCGTGCTGTGCCTGGCAGTGGTATGTGGGAGTGTGTGGACTTCTTCCCTGTTTCCAAGAAGGGTGAGAATGGGTTGGATACTTCCATCAATGGTGCTGAGGTGAAACATGTGATGAAGGTGAGCCTGGATGATGATAGGCATGATTACTATTCAATAGGGAGTTATGATGAGAAGAAGGTTAAGTTCATACCCGATGACTTTAAGAACGATGTTGGTGTTGGATTGAGGTATGACTATGGTATATTCTATGCTTCCAAGACATTTTATGATCAGAGTAAAGATAGGAGAGTGTTGTGGGGTTGGATTGGAGAGTCTGATAGTGAATATGCTGATGTGACCAAAGGTTGGGCTTCAGTTCAGAGCATTCCAAGAACTGTGAGGCTTGATAAGAAGACCGGCAGCAACTTGCTTCAGTGGCCTGTTGTGGAAGTGGAGAGTTTGAGATTAAGAAGCGATGAATTTAAGAATTTGAAGGCCAAACCAGGGTCAGTGGTGTCACTAAATATCGAAACAGCCACACAGTTGGACATAGTTGCGGNGTTTGAGATAGACAAGGAAGCTGTGGAGAAAACGGCTCAGTCAAATGAGGAGTATGTGTGCAGCACCAGTGGTGGAGCTGCCCAACGTGGTGCCTTNGGACCTTTTGGTCTTCTGGTTTTGGCAGATGATGGACTTTCTGAATATACTCCTGTGTACTTCTATGTTGTTAAAGGAAGCAATGGACATCTTAAAACTTCCTTCTGCTCCGATCAATCAAGGTCCTCTGTGGCAAATGATGTTCATAAGCAAATATTTGGGAGCGTGGTTCCAGTACTTGAAGGCGAAAAGTTGTCCTTAAGAATACTGGTGGACCATTCTATAGTTGAAAGCTTTGCTCAAGGAGGAAGGACGTGTGTGACATCCCGGGTTTATCCAACAAGGGCAATCTATGGAGCTGCTCGATTGTTCTTATTCAACAATGCTACTGAGGCCACTGTCACAGCCTCTCTCAAGGTTTGGCAGATGAATTCTGCATTTATACGCCCATTCCGCCCCGATCAGAAGAGTTAAACAAATTAAATTAAATTGGAGATAACAAGACACAATCACAAAGGCAAAGCTTTTTTTTTTTGGTCAAGAAGGGCAAAACTTTTTCGGTGGGCAAGTTGTATCCAACAACTATAATGGCCTAATCATCAACCCACCCAACGTTATGGG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00321	80830	84671	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH32

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01193	INV, sacA	EC:3.2.1.26	Galactose metabolism	map00052
K01193	INV, sacA	EC:3.2.1.26	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO:0004564 beta-fructofuranosidase activity GO:0004575 sucrose alpha-glucosidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000321s00019398.1	PF11837.3	DUF3357	13	117	5.40E-19
Glyur000321s00019398.1	PF00251.15	Glyco_hydro_32N	125	440	6.20E-112
Glyur000321s00019398.1	PF08244.7	Glyco_hydro_32C	510	595	9.70E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.017
SRR1783600	control	0.018
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.103
DRR006520	Root Summer glycyrrhizin high producing strain	0.060
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.737
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.430

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	35.967
SRR2868004	Drought Stress(Tissue:root)	33.261
SRR2967015	Control (Tissue:root)	25.062

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	52.963
SRR9715740	Leave	11.959
SRR9715741	Leave	21.324
SRR9715739	Root	0.000
SRR9715742	Root	0.144
SRR9715743	Root	0.130

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.087
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.732
SRR8400027	Control-Root	2.325