Gene detail

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Gene detail information of Glyur000321s00019402.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G22590.1	3.00E-136	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
NR	XP_007155632.1	0	hypothetical protein PHAVU_003G218200g [Phaseolus vulgaris]
COG	YP_003269585.1	7.00E-66	trehalose-phosphatase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9SUW0\|TPPG_ARATH	3.00E-176	Probable trehalose-phosphate phosphatase G
trEMBL	tr\|V7CFF0\|V7CFF0_PHAVU	0	Trehalose 6-phosphate phosphatase {ECO:0000256\|RuleBase:RU361117}

Sequence

Transcript Sequence

>Glyur000321s00019402.1
ATGGATTTGAAGCCTTCTCATGCTTCTCCTATTCTTACTGATCCTGTTCCCATCAACAAGTCAAGGCTTGGAATCCATTCTAGTCTGCTAGCTTGTTCCCAGCAGGATTCATCACTCTCTCCCGGGAAGTACACAAGAAACAGTTCAAGGAAAAGTATGGGGAGTCTTGATGATGTCAGGTCCAATGGTTGGCTTGATGCCATGAAGGCTTCTTCCCCTCCCAGAAAGAAGATACTCAAAGGTTCAAGTGCTCAGGTTGCTTCAATTGACCATGACATGGAAGACTATAAGTCATGGATGCTGGGATATCCTTCAGCACTATACTCTTTTGAGAAAATCATTGACCATGCAAAGGATAAGAAGATTGCAATCTTTCTAGACTATGATGGCACTCTTACGCCTATAGTTGATCATCCAGATGATGCCCTTATGTCCGAAAGTATGCGTGAAACTGTGAAAAAAGTAGCAAGGTGTTTTCCCACGGCAATTATTAGTGGAAGAAGCCGTGACAAGGTTTTTGATTTTGTTAAACTAACGGAACTCTACTACGCTGGTAGTCATGGAATGGATATTATGGGCCCTGTNAGTGAGACTTTGTCCCAAGACCATCCAAATTGTGTCAAGTCTACTGACCATCAGGGAAAGGAGATAACTCTCTTTCAACCTGCAAGAGAATTCCTTCCCGTGATTGATGAGGTTTTTAGAACCCTCACCGAGATTACTAAAGATATACAAGGCGCAAAAGTTGAAAATCACAAGTTTTGCGTTTCTGTACATTACCGTAATGTAGAAGAGAATAATTGGACAACGGTTGGACAACGTGTCCATGATGTCTTNAAAAATTACCCTCGTTTACATTCAACTCATGGACGGAAGGTTTTAGAAATCCGTCCTGTAATTGACTGGAACAAAGGAAAAGCTGTTGAATTTTTACTTGAATCTCTAGGGTTAACTGATAGGAATGATGTGCTTCCCATCTACATTGGAGATGATAAAACTGATGAAGATGCATTCAAGGTGCTGCGGGAGAGCAATCGAGGCTATGGGATTTTGATCTCATCAGTGAGGAAAGAAAGCAATGCTTTATACTCTCTCCGAAACCCCAGTGAGGTCGGGGAGTTTCTCCAACTCTTGGTGAATTGGAAGGAGGAGGCAGCAAGAAAGGAAGCATATGAGAAGAAAATAAATTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00321	100994	103292	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01087	otsB	EC:3.1.3.12	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0005992 trehalose biosynthetic process

GO:0008152 metabolic process

molecular_function GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000321s00019402.1	PF02358.11	Trehalose_PPase	125	369	8.00E-70

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.089
SRR1783600	control	0.093
SRR1783602	moderate drought stress	0.064
SRR1811619	moderate drought stress	0.063

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.090
DRR006520	Root Summer glycyrrhizin high producing strain	0.089
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.116
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.092

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	5.329
SRR2868004	Drought Stress(Tissue:root)	6.918
SRR2967015	Control (Tissue:root)	1.921

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.218
SRR9715740	Leave	0.040
SRR9715741	Leave	0.027
SRR9715739	Root	0.000
SRR9715742	Root	0.121
SRR9715743	Root	0.045

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.128
SRR8749028	MeJA induced 9h	0.306
SRR8749029	MeJA induced 9h	0.163
SRR8749030	Uninduced	0.484
SRR8749031	Uninduced	0.514
SRR8749032	Uninduced	0.401

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.518
SRR8400027	Control-Root	0.801