Gene detail information of Glyur000322s00020885.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G77850.13.00E-134auxin response factor 17
NRXP_004515659.10PREDICTED: auxin response factor 17-like isoform X1 [Cicer arietinum]
Swissprottr|Q84WU6|ARFQ_ARATH3.00E-168Auxin response factor 17
trEMBLtr|G7J463|G7J463_MEDTR0Auxin response factor {ECO:0000256|RuleBase:RU004561}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00322452710093+


Gene family

Gene familysubfamily
Transcription Factors FamilyARF


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated

GO:0009725  response to hormone


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000322s00020885.1PF02362.16B31162173.30E-23
Glyur000322s00020885.1PF06507.8Auxin_resp2783611.40E-26


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.177
SRR1783600control19.367
SRR1783602moderate drought stress25.341
SRR1811619moderate drought stress24.902

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain25.797
DRR006520Root Summer glycyrrhizin high producing strain25.124
DRR006521Root Winter glycyrrhizin high producing strain29.351
DRR006522Root Winter glycyrrhizin high producing strain28.362
DRR006523Root Summer glycyrrhizin low producing strain26.975
DRR006524Root Summer glycyrrhizin low producing strain26.547
DRR006525Leaf Summer glycyrrhizin high producing strain5.855
DRR006526Leaf Summer glycyrrhizin high producing strain5.897

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.153
SRR2868004Drought Stress(Tissue:root)12.932
SRR2967015Control (Tissue:root)15.541

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.232
SRR9715740Leave9.887
SRR9715741Leave7.442
SRR9715739Root12.498
SRR9715742Root8.687
SRR9715743Root9.622

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h39.739
SRR8749028MeJA induced 9h36.968
SRR8749029MeJA induced 9h18.576
SRR8749030Uninduced14.308
SRR8749031Uninduced3.271
SRR8749032Uninduced10.861

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.511
SRR8400027Control-Root17.239

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved