Gene detail information of Glyur000322s00020890.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G36370.10serine hydroxymethyltransferase 7
NRAES71392.20serine transhydroxymethyltransferase [Medicago truncatula]
COGYP_004194342.17.00E-110serine hydroxymethyltransferase [Desulfobulbus propionicus DSM 2032]
Swissprottr|Q84WV0|GLYC7_ARATH0Serine hydroxymethyltransferase 7
trEMBLtr|G7J467|G7J467_MEDTR0Serine hydroxymethyltransferase {ECO:0000256|RuleBase:RU000585}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003221987327221+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00600glyA, SHMT EC:2.1.2.1 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260
Cyanoamino acid metabolismmap00460
One carbon pool by folatemap00670
Antifolate resistancemap01523


Gene Ontology

biological_process

GO:0006544  glycine metabolic process

GO:0006563  L-serine metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004372  glycine hydroxymethyltransferase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000322s00020890.1PF00464.14SHMT1085063.80E-164


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.555
SRR1783600control7.467
SRR1783602moderate drought stress11.145
SRR1811619moderate drought stress10.928

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.101
DRR006520Root Summer glycyrrhizin high producing strain18.751
DRR006521Root Winter glycyrrhizin high producing strain23.224
DRR006522Root Winter glycyrrhizin high producing strain22.805
DRR006523Root Summer glycyrrhizin low producing strain8.235
DRR006524Root Summer glycyrrhizin low producing strain8.717
DRR006525Leaf Summer glycyrrhizin high producing strain7.982
DRR006526Leaf Summer glycyrrhizin high producing strain7.948

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.236
SRR2868004Drought Stress(Tissue:root)18.998
SRR2967015Control (Tissue:root)9.481

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.390
SRR9715740Leave14.729
SRR9715741Leave8.051
SRR9715739Root1.455
SRR9715742Root6.886
SRR9715743Root4.878

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.747
SRR8749028MeJA induced 9h6.955
SRR8749029MeJA induced 9h2.765
SRR8749030Uninduced16.131
SRR8749031Uninduced7.084
SRR8749032Uninduced2.456

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.371
SRR8400027Control-Root7.305

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved