Gene detail information of Glyur000322s00020893.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G12350.16.00E-1054-phospho-panto-thenoylcysteine synthetase
NRXP_004508627.10PREDICTED: phosphopantothenate--cysteine ligase 2-like, partial [Cicer arietinum]
Swissprottr|Q9LZM3|PPCS2_ARATH1.00E-131Phosphopantothenate--cysteine ligase 2
trEMBLtr|G7JS13|G7JS13_MEDTR0Phosphopantothenate-cysteine ligase-like protein {ECO:0000313|EMBL:AES91310.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003224931455762+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01922PPCS, coaB EC:6.3.2.5 Pantothenate and CoA biosynthesis map00770


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000322s00020893.1PF04127.10DFP501020.00016
Glyur000322s00020893.1PF04127.10DFP1472761.90E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.267
SRR1783600control11.361
SRR1783602moderate drought stress10.533
SRR1811619moderate drought stress10.719

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.932
DRR006520Root Summer glycyrrhizin high producing strain10.579
DRR006521Root Winter glycyrrhizin high producing strain6.728
DRR006522Root Winter glycyrrhizin high producing strain6.156
DRR006523Root Summer glycyrrhizin low producing strain12.233
DRR006524Root Summer glycyrrhizin low producing strain11.041
DRR006525Leaf Summer glycyrrhizin high producing strain9.899
DRR006526Leaf Summer glycyrrhizin high producing strain9.538

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)33.456
SRR2868004Drought Stress(Tissue:root)37.567
SRR2967015Control (Tissue:root)29.904

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.537
SRR9715740Leave20.583
SRR9715741Leave17.001
SRR9715739Root7.128
SRR9715742Root12.679
SRR9715743Root12.777

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h62.146
SRR8749028MeJA induced 9h111.251
SRR8749029MeJA induced 9h30.412
SRR8749030Uninduced156.667
SRR8749031Uninduced84.450
SRR8749032Uninduced63.912

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root30.495
SRR8400027Control-Root28.859

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved