Gene detail information of Glyur000322s00020900.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G22040.14.00E-147Galactose oxidase/kelch repeat superfamily protein
NRXP_003526599.10PREDICTED: F-box/kelch-repeat protein At1g22040-like isoform X1 [Glycine max]
COGYP_003324485.13.00E-15Kelch repeat-containing protein [Thermobaculum terrenum ATCC BAA-798]
Swissprottr|Q9LM55|FBK8_ARATH3.00E-180F-box/kelch-repeat protein At1g22040
trEMBLtr|I1KA24|I1KA24_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G11210.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003229590899015-


Gene family

Gene familysubfamily
Ubiquitin FamilyF-box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000322s00020900.1PF00646.28F-box711112.20E-07
Glyur000322s00020900.1PF01344.20Kelch_11982393.40E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.799
SRR1783600control18.963
SRR1783602moderate drought stress20.172
SRR1811619moderate drought stress20.153

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.978
DRR006520Root Summer glycyrrhizin high producing strain20.651
DRR006521Root Winter glycyrrhizin high producing strain25.552
DRR006522Root Winter glycyrrhizin high producing strain24.586
DRR006523Root Summer glycyrrhizin low producing strain17.288
DRR006524Root Summer glycyrrhizin low producing strain17.285
DRR006525Leaf Summer glycyrrhizin high producing strain8.800
DRR006526Leaf Summer glycyrrhizin high producing strain8.856

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.362
SRR2868004Drought Stress(Tissue:root)30.148
SRR2967015Control (Tissue:root)28.265

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.671
SRR9715740Leave24.843
SRR9715741Leave28.667
SRR9715739Root14.496
SRR9715742Root20.538
SRR9715743Root21.018

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.122
SRR8749028MeJA induced 9h22.211
SRR8749029MeJA induced 9h11.679
SRR8749030Uninduced18.796
SRR8749031Uninduced15.407
SRR8749032Uninduced14.375

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.560
SRR8400027Control-Root24.639

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved