Gene detail information of Glyur000324s00015430.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G32640.16.00E-24Basic helix-loop-helix (bHLH) DNA-binding family protein
NRKEH18599.13.28E-48basic helix loop helix (bHLH) family transcription factor [Medicago truncatula]
Swissprottr|Q39204|MYC2_ARATH4.00E-33Transcription factor MYC2
trEMBLtr|A0A072TM63|A0A072TM63_MEDTR1.00E-48Basic helix loop helix (BHLH) family transcription factor {ECO:0000313|EMBL:KEH18599.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003243744738334+


Gene family

Gene familysubfamily
Transcription Factors FamilybHLH


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0046983  protein dimerization activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000324s00015430.1PF00010.21HLH811268.10E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.638
SRR1783600control7.392
SRR1783602moderate drought stress14.876
SRR1811619moderate drought stress12.420

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.132
DRR006520Root Summer glycyrrhizin high producing strain11.253
DRR006521Root Winter glycyrrhizin high producing strain10.586
DRR006522Root Winter glycyrrhizin high producing strain9.852
DRR006523Root Summer glycyrrhizin low producing strain4.509
DRR006524Root Summer glycyrrhizin low producing strain4.965
DRR006525Leaf Summer glycyrrhizin high producing strain5.398
DRR006526Leaf Summer glycyrrhizin high producing strain4.478

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.674
SRR2868004Drought Stress(Tissue:root)2.861
SRR2967015Control (Tissue:root)2.318

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.952
SRR9715740Leave1.801
SRR9715741Leave2.457
SRR9715739Root3.562
SRR9715742Root2.487
SRR9715743Root1.936

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.647
SRR8749028MeJA induced 9h0.436
SRR8749029MeJA induced 9h0.708
SRR8749030Uninduced0.661
SRR8749031Uninduced0.242
SRR8749032Uninduced0.691

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.223
SRR8400027Control-Root2.624

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved