Gene detail information of Glyur000325s00013496.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G60410.50DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain
NRXP_004505964.10PREDICTED: E3 SUMO-protein ligase SIZ1-like isoform X1 [Cicer arietinum]
Swissprottr|Q680Q4|SIZ1_ARATH0E3 SUMO-protein ligase SIZ1
trEMBLtr|G7JQG1|G7JQG1_MEDTR0E3 SUMO-protein ligase SIZ1 {ECO:0000313|EMBL:AES88651.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003253992051043-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000325s00013496.3PF02037.22SAP12421.80E-08
Glyur000325s00013496.3PF02891.15zf-MIZ3463944.70E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.628
SRR1783600control19.986
SRR1783602moderate drought stress27.471
SRR1811619moderate drought stress27.542

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.185
DRR006520Root Summer glycyrrhizin high producing strain22.759
DRR006521Root Winter glycyrrhizin high producing strain41.416
DRR006522Root Winter glycyrrhizin high producing strain39.660
DRR006523Root Summer glycyrrhizin low producing strain35.707
DRR006524Root Summer glycyrrhizin low producing strain36.126
DRR006525Leaf Summer glycyrrhizin high producing strain13.689
DRR006526Leaf Summer glycyrrhizin high producing strain13.636

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)47.665
SRR2868004Drought Stress(Tissue:root)66.087
SRR2967015Control (Tissue:root)69.914

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave30.159
SRR9715740Leave28.210
SRR9715741Leave42.275
SRR9715739Root15.611
SRR9715742Root37.571
SRR9715743Root32.696

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h33.809
SRR8749028MeJA induced 9h56.582
SRR8749029MeJA induced 9h33.728
SRR8749030Uninduced46.084
SRR8749031Uninduced62.518
SRR8749032Uninduced55.812

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root46.252
SRR8400027Control-Root41.749

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved