Gene detail information of Glyur000325s00013516.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60190.1 | 7.00E-74 | Cysteine proteinases superfamily protein |
| NR | XP_004505947.1 | 1.54E-144 | PREDICTED: NEDD8-specific protease 1-like [Cicer arietinum] |
| Swissprot | tr|Q9LSS7|RUBP1_ARATH | 7.00E-92 | NEDD8-specific protease 1 |
| trEMBL | tr|G7JRH9|G7JRH9_MEDTR | 2.00E-137 | Ulp1 protease family, carboxy-terminal domain protein {ECO:0000313|EMBL:AES88701.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00325 | 177898 | 178593 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | ULP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000325s00013516.1 | PF02902.14 | Peptidase_C48 | 32 | 179 | 5.60E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.179 |
| SRR1783600 | control | 2.424 |
| SRR1783602 | moderate drought stress | 3.210 |
| SRR1811619 | moderate drought stress | 3.134 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.962 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.676 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.556 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.854 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.792 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.113 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.381 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.528 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.026 |
| SRR2967015 | Control (Tissue:root) | 1.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.379 |
| SRR9715740 | Leave | 0.344 |
| SRR9715741 | Leave | 0.275 |
| SRR9715739 | Root | 1.335 |
| SRR9715742 | Root | 1.213 |
| SRR9715743 | Root | 0.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.907 |
| SRR8749028 | MeJA induced 9h | 0.623 |
| SRR8749029 | MeJA induced 9h | 0.893 |
| SRR8749030 | Uninduced | 0.373 |
| SRR8749031 | Uninduced | 2.424 |
| SRR8749032 | Uninduced | 3.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.030 |
| SRR8400027 | Control-Root | 0.229 |