Gene detail information of Glyur000326s00025800.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G24300.20Glycogen/starch synthases, ADP-glucose type
NRXP_004502657.10PREDICTED: soluble starch synthase 1, chloroplastic/amyloplastic-like isoform X1 [Cicer arietinum]
COGYP_592424.11.00E-108glycogen synthase [Candidatus Koribacter versatilis Ellin345]
Swissprottr|Q9FNF2|SSY1_ARATH0Starch synthase 1, chloroplastic/amyloplastic (Precursor)
trEMBLtr|I1JYR0|I1JYR0_SOYBN0Starch synthase, chloroplastic/amyloplastic {ECO:0000256|RuleBase:RU361232}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00326158574167527-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT5


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00703glgA EC:2.4.1.21 Starch and sucrose metabolism map00500
Biofilm formation - Escherichia colimap02026


Gene Ontology

biological_process

GO:0009058  biosynthetic process

GO:0009250  glucan biosynthetic process


molecular_function

GO:0009011  starch synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000326s00025800.1PF08323.6Glyco_transf_51564136.20E-68
Glyur000326s00025800.1PF00534.15Glycos_transf_14676182.60E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.954
SRR1783600control0.973
SRR1783602moderate drought stress2.308
SRR1811619moderate drought stress2.221

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.801
DRR006520Root Summer glycyrrhizin high producing strain1.786
DRR006521Root Winter glycyrrhizin high producing strain35.775
DRR006522Root Winter glycyrrhizin high producing strain35.497
DRR006523Root Summer glycyrrhizin low producing strain2.268
DRR006524Root Summer glycyrrhizin low producing strain2.308
DRR006525Leaf Summer glycyrrhizin high producing strain68.332
DRR006526Leaf Summer glycyrrhizin high producing strain67.791

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.576
SRR2868004Drought Stress(Tissue:root)3.600
SRR2967015Control (Tissue:root)1.913

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.310
SRR9715740Leave14.018
SRR9715741Leave13.569
SRR9715739Root0.765
SRR9715742Root1.492
SRR9715743Root1.045

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.135
SRR8749028MeJA induced 9h2.149
SRR8749029MeJA induced 9h2.149
SRR8749030Uninduced1.340
SRR8749031Uninduced0.790
SRR8749032Uninduced0.759

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.687
SRR8400027Control-Root4.854

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved