Gene detail information of Glyur000327s00026460.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G03290.10isocitrate dehydrogenase V
NRXP_003535178.10PREDICTED: isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [Glycine max]
COGYP_008088736.12.00E-137isocitrate dehydrogenase, NAD-dependent,mitochondrial type [Chthonomonas calidirosea T49]
Swissprottr|Q945K7|IDH5_ARATH0Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial (Precursor)
trEMBLtr|I1L903|I1L903_SOYBN0Isocitrate dehydrogenase [NAD] subunit, mitochondrial {ECO:0000256|RuleBase:RU361266}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003277616584639-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00030IDH3 EC:1.1.1.41 Carbon metabolism map01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cycle (TCA cycle)map00020


Gene Ontology

biological_process

GO:0006099  tricarboxylic acid cycle

GO:0055114  oxidation-reduction process


molecular_function

GO:0000287  magnesium ion binding

GO:0004449  isocitrate dehydrogenase (NAD+) activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287  NAD binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000327s00026460.1PF00180.15Iso_dh313542.70E-104


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control34.830
SRR1783600control35.122
SRR1783602moderate drought stress26.374
SRR1811619moderate drought stress26.264

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain46.313
DRR006520Root Summer glycyrrhizin high producing strain45.766
DRR006521Root Winter glycyrrhizin high producing strain50.468
DRR006522Root Winter glycyrrhizin high producing strain49.010
DRR006523Root Summer glycyrrhizin low producing strain42.244
DRR006524Root Summer glycyrrhizin low producing strain42.065
DRR006525Leaf Summer glycyrrhizin high producing strain44.869
DRR006526Leaf Summer glycyrrhizin high producing strain44.762

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)109.801
SRR2868004Drought Stress(Tissue:root)97.138
SRR2967015Control (Tissue:root)83.299

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave89.001
SRR9715740Leave71.029
SRR9715741Leave101.990
SRR9715739Root25.847
SRR9715742Root51.722
SRR9715743Root44.956

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h92.632
SRR8749028MeJA induced 9h90.184
SRR8749029MeJA induced 9h94.535
SRR8749030Uninduced95.563
SRR8749031Uninduced104.032
SRR8749032Uninduced78.261

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root73.098
SRR8400027Control-Root77.677

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved